BAC Information

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BAC

Clone NameMSMg01-305D01
Chromosome1 (Build37)
Map Location 18,178,578 - 18,178,985
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4
Downstream geneEG574082, EG654460, Defb17, LOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305D01.T7 (MSMg01no305_d01.b1)MSMg01-305D01.TJ (MSMg01no305_d01.g1)
ACCAG430241AG430242
length1,2631,281
length of high quality
(start - end)
411 (44 - 454)345 (510 - 854)
definitionCHROMAT_FILE: MSMg01no305_d01.b1 PHD_FILE: MSMg01no305_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:48 2005CHROMAT_FILE: MSMg01no305_d01.g1 PHD_FILE: MSMg01no305_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCGCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTACTCTGTTCCCTAGTGTTTGGAATACTTTCCCCACAAATACCATG
ACCATGGGGCTAAAAATGTCAAATATAGACTTAGAAAAAAACCTTTTCTT
CCTAACCTACTTAGCTTTTTCTTCTGCCCAATATTTATATATATTGAGAA
GGCTAGGGTGTTTCCTTGCCGGGCTTCAAATTGGCAGTTTAGGAGACTAG
ACCTAAATATCTGTTTCAAAGAACTGGGCAATTCCAGGCAAGTCCAGACC
TCAGAAGATGTCCTTCCACCTCATCTGAGGCAAGGACAATCAGTAAGTAG
CAGTTTCCAGACTTCCTCAGCAACAGTTTTCAGACCTCCCCAGCAAGTTT
TCAATCCCACACCCATAATGGCATGTCCATAGAGATGGACTCAACATATT
AACATATATGTCACCCCCCCCGGAATTCTCTAATGTGCTTTAAATAAAGA
GGGCGAACTCACTTGGTTGTCTCTCTATTCTGGTAATGGGAGACCCCAGC
ATGCTCGACTTCTGCAGAATAAAACATTCTTTGTGTTTACATTGTATTTG
AGTTTCAGGTATCATTCTTCAGGTATCATTCAAATCATGGACCCTTATAA
TATGTGTGTATGGGTATGTATGTACATGTGTGTGTGTGGGGGGGTCNACA
AAAAGATAGAGAGATCTGCAGCCCTATAATTGGAAAAACAATATGAACTA
CCAAGTACTCCCCAGAGCTCATGTCTCTAGCTCCATATGGATCAGAAGAT
GGCTTAATTGGCCATCAGTGCAAAGAGAGGCCCATTAGTCGTGCAAACTT
TATCTGCCTCAGTACAGCGGAAACGCCAGGGCCCAAAAATGTGAGGGGGT
GGGTGGGGGACTTTTGGGATACATTGCAAATGTAATGAAATAATTACCTA
ACTTTTATAACTTGTAATACAAAGAACCGAAGAGATTCCCCTATTTCATG
ATTTCCTACTCATGTAGCCTTTTTAAGGTGGGTTAAAAAATGTTGTCCCC
TATGGCTTTCTTTGGATGGCATAACCCAGCTTATTGCGGGGTAGAAACCG
CCTATTTTGACCTTCTGCTCCCAGGGACTACTATTCCCTTCGTACATAGG
AGCTTGTTAGGTATTCTTTCATTATAGTCTTATCTTTTTCCCTCCTTCTA
AAAGANACCCGCTCCCTTTCCTCTCTGATTTACGGCCACCCCCTTAGATA
TACTCCTATTTTC
NNNTTAGCAGATGAGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAGCCAGAGGGGATAGAGAGCACCTAG
AAAACAAGGCTGTCTGAATACAGAAAGACTGACACATACTAGCCCACTGA
GACTGTGGTATCATGCACAGCACCTGCAAAGGTCTAAGTCAGATGAGCAC
AGCAACTAGGGGGGGTGGGTGGGCACATGTTACCACTCCTAACACAGATG
TTATCTCTAATTTAAAAGGAAAAATTAGTTTCCTCCAATAGAGTATACAA
ATCATTCTTAAGGGCAAGTCCTGTGCCAGCAGTAGGTGACCAACACAAGG
TGAACTCTAGTAATTTTGGAGGCTTTTGTCTCCTAATGCTTTGTCTGAGC
ATTTCTTTACTTATTTGTTTGTTTGTTTATTTTTTAATCCTACTGGNCTT
TTGTTATTTTTTTTCCCCCCCCCANNGNACCTTTAAAGCACAAAAAAAAA
GGGGGGGTNTGTTACTGTGTCTTTAAGTTTTTCTGGTTCCTTTTTTGTCT
CTTTTTTATGTTCCTTTGTGTTGTCCTATTCATATTGATTTGCTTATTAT
ATGATATTATTTATTATTTCCTTAGATTTGTGCTTATTTTCTAATGAAAA
AGAATGAAAATGCGTATGAGTTGAGTGGCTTAGTTTGGTGGAGAGATACA
GAGGCTCTGGAAGAAGTTGGAGAAGGGGAAACCAGAATCAGAATATACTG
TATGAAGAAATATATATTTTCAATAAAAAAAGAAGATAATCAAGGTGTCT
AATAATTGATTTTAGCTGCTATTGTAAGAATGTGGAAGTGTATGTTAAAC
CTGATTTGACAAAAATATGCATTTCCAAAATGCTTTTCACTTCATTTTCT
GAAGAAAAAGACAGTATTATTTACAGCCAATTATTGATCAATGAATGGAT
TGACACATTATTCTTAAATTATCAACTGATAAAAATATTTCTGCTCACTA
TCGATCTTTTTTCCAACTACTGAAAAAATTAATTAATCTATTAAAAAATG
GGGCCTATAATGAAAATTCCACCAATTTTTAAAAGAATTTTAAGAATGCT
TAATTACAAAATTGTAATTAAAATCCTGGCTGGAAAATTCAATTTGTTTC
TTTAACCCACAACCTGTCTCTCCAAGGTGATTTTTAACTCTTTTGGGAAA
AAAAATAGGAATATTCTCTTTTATTTATAACCTCTTTAAAAACCTTAATA
GCCCCCTCGTTTAAGAAACATGAAAATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_d01.b1 MSMg01no305_d01.b1 CHROMAT_FILE:
MSMg01no305_d01.b1 PHD_FILE: MSMg01no305_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:48 2005
         (411 letters)



>mm_chr1_18178375_18179185
          Length = 811

 Score =  729 bits (377), Expect = 0.0
 Identities = 401/409 (98%), Gaps = 2/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctactctgttccctagtgtttggaatactttccccacaaataccatgaccatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctactctgttccctagtgtttggaatactttccccacaaataccatgaccatg 263

                                                                       
Query: 64  gggctaaaaatgtcaaatatagacttagaaaaaaaccttttcttcctaacctacttagct 123
           || |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 ggcctaaaagtgtcaaatatagacttagaaaaaagccttttcttcctaacctacttagct 323

                                                                       
Query: 124 ttttcttctgcccaatatttatatatattgagaaggctagggtgtttccttgccgggctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct: 324 ttttcttctgcccaatatttatatatattgagaaggctagggtgtttacttgtcaggctt 383

                                                                       
Query: 184 caaattggcagtttaggagactagacctaaatatctgtttcaaagaactgggcaattcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaattggcagtttaggagactagacctaaatatctgtttcaaagaactgggcaattcca 443

                                                                       
Query: 244 ggcaagtccagacctcagaagatgtccttccacctcatctgaggcaaggacaatcagtaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcaagtccagacctcagaagatgtccttccacctcatctgaggcaaggacaatcagtaa 503

                                                                       
Query: 304 gtagcagtttccagacttcctcagcaacagttttcagacctccccagcaagttttcaatc 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 gtagcagtttccagacttcctcagcaacagttttcagacctccccagcaagttttcaa-c 562

                                                            
Query: 364 c-cacacccataatggcatgtccatagagatggactcaacatattaaca 411
           | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cacacacccataatggcatgtccatagagatggactcaacatattaaca 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)