Query= MSMg01no305_f12.b1 MSMg01no305_f12.b1 CHROMAT_FILE:
MSMg01no305_f12.b1 PHD_FILE: MSMg01no305_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:09 2005
(277 letters)
>mm_chr1_115031431_115032107
Length = 677
Score = 505 bits (261), Expect = e-147
Identities = 273/277 (98%)
Strand = Plus / Plus
Query: 1 tccctattgttgaacttgcattttctaagctgaagttggacccttggcagctgtttaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctattgttgaacttgcattttctaagctgaagttggacccttggcagctgtttaata 260
Query: 61 aatacttattttataaatgaacaaatccatctaatagggactggatgaattgtttaagag 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 261 gatacttattttataaatgaacaaatccatctaatagggactgaatgaattgtttaaaag 320
Query: 121 ctaataaaagaaagacacatactaactaaacttaatccattttcttcactcaaaattaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaataaaagaaagacacatactaactaaacttaatccattttcttcactcaaaattaca 380
Query: 181 ttagatggccatagtaaatgtaaagatcttggcctgcaagcaataaaatttgagttgtgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ttagatggccatagtaaatgtaaagatcttggcctgcaagcaataaaatttgagttgtat 440
Query: 241 ctctaaaatatacattaaaagcttgaaatagagttat 277
|||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctaaaatatacattaaaagcttgaaatagagttat 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no305_f12.g1 MSMg01no305_f12.g1 CHROMAT_FILE:
MSMg01no305_f12.g1 PHD_FILE: MSMg01no305_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:09 2005
(614 letters)
>mm_chr1_115174262_115175276
Length = 1015
Score = 855 bits (442), Expect = 0.0
Identities = 515/546 (94%), Gaps = 17/546 (3%)
Strand = Plus / Minus
Query: 71 tatttgttttactgaaattcaaagaagcttcacattagaaatggagtttcatctctttga 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 tatttgttttactgaaattcaaagaagcttcacattagaaatggagtttcatctctttga 954
Query: 131 atgagctcatgtagattgaccagttttctctgtctctgtctctctctgtctctctctgtc 190
|||||||||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 953 atgagctcatttagattgaccagttatctctgtctctgtctctctctg------tctgtc 900
Query: 191 tctctgtctctctgtctctctgtctctctgtctctctgtctctctctctctctctctctc 250
|||| |||||| |||||| ||||||| |||||||| ||||| ||||| ||||| ||
Sbjct: 899 tctc--tctctc--tctctc--tctctctctctctctg--tctctgtctctgtctctgtc 848
Query: 251 tctctctctctctctctctctctctctctctcctttcttcctgctgctcttctgtcctca 310
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tctgtctctctctctctctctctctctctctcctttcttcctgctgctcttctgtcctca 788
Query: 311 ttttgatcatgccgaagtcccactctatccctctcatatgccatcactgacatacatgat 370
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ttttgatcatgttgaagtcccactctatccctctcatatgccatcactgacatacatgat 728
Query: 371 gagttctgtaagtc--tcaaacttgctttccaatccattatttttgttattctaggcttg 428
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gagttctgtaagtctatcaaacttgctttccaatccattatttttgttattctaggcttg 668
Query: 429 ttggtaataatcttgctgtttgcaagaatacagactgctgtggatcttagcatctggtac 488
|||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct: 667 ttgggaatcatcttgctgtttgtaagaatacagactgctatggatcttagcatctgatac 608
Query: 489 ttaagggaatgttttgcaagaactctatctatataataaatagctcactgaactttttaa 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttaagggaatgttttgcaagaactctatctatataataaatagctcactgaactttttaa 548
Query: 549 tgcatatacacagtgcgtgcaattttaaagtaaaatcagcagaaacagatctatgcttcc 608
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgcatatacacagtg-gtgcaattttaaagtaaaatcagcagaaacagatctatgcttcc 489
Query: 609 atgtag 614
||||||
Sbjct: 488 atgtag 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 33
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1015
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1005
Effective search space: 607020
Effective search space used: 607020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
