BAC Information

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BAC

Clone NameMSMg01-305G08
Chromosome1 (Build37)
Map Location 48,560,931 - 48,561,331
singlet/doubletsinglet
Overlap geneLOC674566
Upstream geneLOC666869, LOC546734
Downstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305G08.T7 (MSMg01no305_g08.b1)MSMg01-305G08.TJ (MSMg01no305_g08.g1)
ACCAG430380AG430381
length1,3031,326
length of high quality
(start - end)
412 (44 - 455)328 (73 - 400)
definitionCHROMAT_FILE: MSMg01no305_g08.b1 PHD_FILE: MSMg01no305_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:16 2005CHROMAT_FILE: MSMg01no305_g08.g1 PHD_FILE: MSMg01no305_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGCAATCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGAAAGGGGATGGAATAAAGAGCACTTCTTGCTGGAAAGATTCAC
AAACCAATACCTGAATTTTAGAATTACAATTGTGAAAGTTTGTTATCCGT
AATCCCTGGTGCTTCACAGTGGATCTTACAAAGTCTATTGCTCTCTCTAT
CCTGGAGGCATCAACTCACAGATAGTTCCATATTAGGAATGTGAATATAT
CTATATCTATCTCTATATCTATCTCTATATCTATATCTACATCTATATCT
ACATCTATCTATATATGTGTGTAATTGTGTATATGTACATGTATATGTAT
GTGTACATGTATATGTATATCAAGCATATATGTGTCTCTAGGTGCCTATT
ATTTTTGTATTCAGGTTGGAACATTGGCTTCAAATTTCAATGTGTGGAAA
CTTTTGTTTTCCCCCCCCCCCCACATGTACTGACCCTGATTAAAGAAGGA
GGGACGAAATTCTGTAAAAAGAAAATCCTGATAACCAAAGGTTGTATTCT
ACCTGTGCAAGACCATTTCTCTTATTGTGTCCTTCCTTAGCTACTCGTCC
TTCCTTATGGATGGTTGAGGATTTGTGGGTCTTCCTCCAATCACTTAGGT
TTGTCTGTTGTGTTTGTTCTGTTCATTTCATGTATTGCCAAGCATATGGT
TGCATTTTATAGATGGAGCTCCTGATATTATTAGGAGAATCAGTGTCAGA
GCAAACTGACAGATCCTCTGGCTCTTAAAGTCCTTTTCCTAATACCATAA
ATACAAGGAACATTGTACATATGGGGAAAGTTTTACTCATCTATGTGGAG
TTTACACATGTACACCTACCTACCTTCATGTTTATGAATGTATGTTTGCA
TTTAGAGCAACGAATAAAAAGAGAGCATGATTTTGAAAAAAATCTAGAAT
TTGTATAAAGGGAGGTTTTGGTGTGAGCAAATGAAAATAAAATACTGTAA
TTAATTAATATCCTACAAAGTAAACAATGCTTTTAAAAATAATTTCACAG
AAAAAAAGGTAAGAAAAATTTATAGGGTGGACCTGGAAACCATTTAAATC
TCTAGCAAAAATTCTCTTGGGCCAAAAAAAACTGTTTATTCTTAATAATC
ATAACACATTTTTCTCTTGCTCTCTTTAAATAAATCCTCTTTTTATATAA
TAATTAGACATTATTTTTTTTTTGGATTAAGTCCTTATATAAGTTCTTTT
CTCTACCATTATCTTCTAATATTATTTTTTTTATATCCCAAATTCCTTTT
CTA
NNGGTTACTGATGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATCAAACCTTCAAAGAAGACCCGATAC
CACTACTCTTCAAACTATTCCACAAAATAGAAACAGAAGGAACGCTAGCT
AGTTCATTCTATGAGGCCACAGTTATGCTACATATTGGTTTTTTTGTAGA
TGGAATGGTTTCTGTCTAATGAGATACTTGTCACAATTTCCTTTCAAAGA
GGACTTAATAAGAAAAATTTTTCTACTTCTATCATGTTTAATGTTTCAAA
TAGATTTTAAAAACTGGTTCAGTGCATATGACTTTTAGCTTCAGAAGATA
TCATGTACATTTAAGAGGCCTTTAACTGCTATAAATTAATCTGATTACTT
ATTTTTTTGTTAATACTGAGTTGTATACTTTAAAACAAATTTTATTAGNT
TGATTTTTTTTTTCCCCCGCCCCCAGANNGNCTTCCCTCCTCAAAAAAAA
GGGGGGGGGGGTCNTGCNTCGNAAACTCCGAGATCAATCTCCAAAATGAC
TGGAATGAATTAAGAATGAGAGGAATGGGGAGTTTACTGTGAGATTATGA
CTTCTCGAAATGTCAGGAGCTATGTATAACTACACAAAATATCATCAAAA
TGACTGACTAAACATGACTTTAACAATGGTAACACTGATGGACATGCAAA
TATAGATGGCAAAAATCTCATGAGGCCTCAATCTACAAAAAGAACTATAA
GGAACTAATGAATCCTGGAACCAGGAAAAATAGTCTTACCTAGGAAAGAG
CCCAATAATTGGCTGAATACATATTCTTAGAAGTAAGATTATACCAATTA
ATCCAAATTTATTTGTGTGTGTGTGGCCGTGCAAAACATAACCTAAAAAA
ATGGTTTATGATTTTGAAAAACCCCAGTGGTAGGATTCAATATTTAAGGG
ATAAATTTACTTAAAATCTCTAAAAAGAAAAAAAAAACTGGTACCCGGAT
ACTTTTGAACCTTTTAAAGTAATTCAAATAGTTCTAATTATTTGAAAAGC
CTTTTGAATTCTTTTTTATAGTATCGGATCGAAAATAAACATGTATAAAC
TTCTACTTCTATCTAAATAAAAAATTTGACAATATTTTTTTTTCCTTTAA
ATTCCCGGGAAAATAAAAACTTTTAATGTCTTTTGCAATTGGAGGCCATC
CGAATTGCCTTGTTCGTATACATCCTATCCCTTAATATGGTGGTATGGCC
TTCTCCTGTATCGTTCATATTGTGCAACTCGTGTCTTTTCTCTCTTCTTC
ATCTTAGTCCTCGTGTTATTGTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_g08.b1 MSMg01no305_g08.b1 CHROMAT_FILE:
MSMg01no305_g08.b1 PHD_FILE: MSMg01no305_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:16 2005
         (412 letters)



>mm_chr1_48560931_48561742
          Length = 812

 Score =  714 bits (369), Expect = 0.0
 Identities = 393/401 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgaaaggggatggaataaagagcacttcttgctggaaagattcacaaaccaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 401 gaattcattgaaaggggatggaataaagagcacttcttgctggaaagattcagaaaccaa 342

                                                                       
Query: 65  tacctgaattttagaattacaattgtgaaagtttgttatccgtaatccctggtgcttcac 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 341 tacctgaattttagaattacaattgtgaaagttagttatccgtaatccctggtgcttcac 282

                                                                       
Query: 125 agtggatcttacaaagtctattgctctctctatcctggaggcatcaactcacagatagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agtggatcttacaaagtctattgctctctctatcctggaggcatcaactcacagatagtt 222

                                                                       
Query: 185 ccatattaggaatgtgaatatatctatatctatctctatatctatctctatatctatatc 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 acatattaggaatgtgaatatatctatatctatctctatatctatctctatatctatatc 162

                                                                       
Query: 245 tacatctatatctacatctatctatatatgtgtgtaattgtgtatatgtacatgtatatg 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 161 tacatctatatctacatctatctatatatgtgtgtatttgtgtatatgtacatgtatatg 102

                                                                       
Query: 305 tatgtgtacatgtatatgtatatcaagcatatatgtgtctctaggtgcctattatttttg 364
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 101 tatgtatacatgtatatgtatatcaagcatatatgtgtctctaggtgcctattatgactg 42

                                                    
Query: 365 tattcaggttggaacattggcttcaaatttcaatgtgtgga 405
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  tattcaggttggaacattggcttcaaatttcaatgtgtgga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)