BAC Information

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BAC

Clone NameMSMg01-305I07
Chromosome1 (Build37)
Map Location 142,634,335 - 142,634,616
singlet/doubletsinglet
Overlap genenone
Upstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305I07.T7 (MSMg01no305_i07.b1)MSMg01-305I07.TJ (MSMg01no305_i07.g1)
ACCAG430459AG430460
length1,2891,223
length of high quality
(start - end)
299 (31 - 329)---
definitionCHROMAT_FILE: MSMg01no305_i07.b1 PHD_FILE: MSMg01no305_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:33 2005CHROMAT_FILE: MSMg01no305_i07.g1 PHD_FILE: MSMg01no305_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCAGATCAATCGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGA
ATTCTCCTGAGGAACAGAGTTAATATAGTATAGTATAGAAAGGAAATATT
AAAAAGGGGATTTCATTGTATTTTTTGTTTTGTTGGAATATAGCCATCTT
TAGGTAAGTGAGACAACAAGCCTGATTGAAGTTGAAACAACAATCCAAGA
AGTTGAAAGCCTCTGCCTGAGTTAGTTAGAGTTGGGAGTGATCAATGCTG
TAGCCCTAGTGTTACTTTGAGTTCCATGAAGTTTCTTGTAGAGCTGTGGG
TCTGAGTTATCTATACTGAAAGGATGGAGAAGCTGGATCTATCACAATAG
TCATTGGTAGAAGGTGTTGAAACACTCATGATGAATGGGGGTTTTATACA
TTTGTTGTCTTATTCTCCTTCAACCTTTTTCTCTGGGCTCAGATAATGCA
ACTTTTTTTTTCCCCGCGCCCCCCNTNNGAANTTATTGTCTAAAAAAAGA
GGGGGGGTTGCNNNCTTCNCCNCNGATATTCCNNAGGGGTATACTCAGCA
TCCTTCAATCCAGTCTAACTGACAACTAAGGTAACCATCACTCCTTTATC
CCTTTTTATATAGACATTTGACACTAGAACCACAAGCAATAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAGCAAAAACAACACAATG
TCCTTCAAATGGAAAATTGTGCCAAGTGACCGTATTTGTAGAAACATCTT
AGGCAAAAACGTACCAATAAAACACAGATTTTTACATTTGATTGAAACCA
TTGATGATGCTATCTTGCCAGCATAATTGAGATGATAAGCCTTGCACGCC
ATTTTTAACTTTCGGTATATGGTCCGAACCAGGTGATAAAAGATAGGACC
ATTTTTACTTCATCCCCATAAATATGGCATGCAAATTTCAATCTCCTTAA
TTTTAAAAATATGATATTCGGGGTAAAATATTAGCGTATTACCTTTGGAA
TAAATGTAAAAATTTCTCATTCTCCTTACCATATATTTCCTAAAAAAATT
GTTTGGGGAAATAAACTTTCTTTTCTATAAATATATTTTTTTTTTAATTC
TCAGAATTTTAACAGGAAAAGGAAACCAAATTTTAACCTTTTCGGAATTT
TAAAAATTTTTCTTCAAACTATTTTTTTTTATCCATCTCTTTTTCTCCTT
ATTTTTGTGTGGAACACATTTTTTGCTCACTTCTGTTTTATCACTTCGAG
AGTCATATAAATAACTTTCTTCATATAATTTATTTACTC
NCCAAATNNNNNNNGGCTGATTGGTGTCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXGGGNGGACCCTTAAAGTTCGCCNNGNNNNNN
NNNNNNNGGGNGNNNNCCTTTTAAGGCCCCNCNNGNNNNNNGGGGGGNNN
GNNNNNNNNGGNGNNNGGNNNGNNNNNGNNGGNNGGNCCCCCGGGGGGGG
GGGGGNNNNGNGNNGNNGGNNNNNNNGGGGNGGGGGGGGGGGGNNNGGGN
NNNNNGNNGGNNNGGGGNNNGNNGGNGNNGNGNNNNGGGGNNNGGGGGGG
GGGNNNGGNGGNNNGGNNNNGGNNNNNNNNNNNGGNGNNNNNNNNGGNGN
GGGNNNNNNNNNNNNNNGNNNNNGNNGGNNNNGNNGGNNNGGGGNNNNGG
GGGTTTTTTTTGNNNNNGNNGGNGGNGNGNNNNGNGGGGGGGGGGGGGNG
NGGNNNGTTTTTTGGTCGCCCCCCCCNNNNNNGNNNNNNNCCCNAAAAAA
AAAGAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNCNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCNNNNNNNNCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCC
CCCCCCCNCCCCCCCCCCCNCCNNCCCCCCCCCCCCNCCCCCCCCCCCCC
NCCCCCCCCCNCCCCNCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCC
CCCCCNCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCC
CCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCC
CCCCCCCCCCCCCCNCCCCCCCCCCCCCCCNCCCCCNNCNCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCNCNCCCNCNNCCCCCCCCCCCCCCCNCNCC
CCCCCCCCCCCCCCCCCCCNCCNCCCCCCCNCNCCCCCCCCNNCCCCCCC
CCNCCCCNCCCCCCCCCNCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_i07.b1 MSMg01no305_i07.b1 CHROMAT_FILE:
MSMg01no305_i07.b1 PHD_FILE: MSMg01no305_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:33 2005
         (299 letters)



>mm_chr1_142634118_142634816
          Length = 699

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 18  ggaattctcctgaggaacagagttaatatagtatagtatagaaaggaaatattaaaaagg 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ggaattctcctgaggaacagagttaatatagtatagtatagaaaggaaatattaaaaagg 277

                                                                       
Query: 78  ggatttcattgtattttttgttttgttggaatatagccatctttaggtaagtgagacaac 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggatttcattgtattttttgttttgttggaatatagccatctttaggtaagtgagacaac 337

                                                                       
Query: 138 aagcctgattgaagttgaaacaacaatccaagaagttgaaagcctctgcctgagttagtt 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aagcctgattgaagttgaaacaacaatccaagaagttgaaagcctctgcctgagttagtt 397

                                                                       
Query: 198 agagttgggagtgatcaatgctgtagccctagtgttactttgagttccatgaagtttctt 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agagttgggagtgatcaatgctgtagccctagtgttactttgagttccatgaagtttctt 457

                                                     
Query: 258 gtagagctgtgggtctgagttatctatactgaaaggatggag 299
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtagagctgtgggtctgagttatctatactgaaaggatggag 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)