BAC Information

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BAC

Clone NameMSMg01-305L05
Chromosome1 (Build37)
Map Location 113,100,816 - 113,101,132
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305L05.T7 (MSMg01no305_l05.b1)MSMg01-305L05.TJ (MSMg01no305_l05.g1)
ACCAG430583AG430584
length1,3341,342
length of high quality
(start - end)
411 (44 - 454)329 (507 - 835)
definitionCHROMAT_FILE: MSMg01no305_l05.b1 PHD_FILE: MSMg01no305_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:58 2005CHROMAT_FILE: MSMg01no305_l05.g1 PHD_FILE: MSMg01no305_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGGTTCTTTCCAGTTCCTGGCTATTATGAATGACACTTCAGTGAAC
ATAGTTGTACAATAATATTTGCTGTATATAAAAGCATCCTTGGATATATG
TCTAAGAGTGGAATAGCTGCCTTTTGAGATAGAACAATTTTCAATTTTCT
GAGGAACCATTATATTGATGTCCATAGTGAATGCACAATTTTGTACCCTT
ATCAGCAGTGGAGGATTGCTACCTATGTGCTATATTTTCACCAACAACAG
TTATCACTTGTGTTTTGATTTTAGTCATTCACTGTGGTGTAAGATGGAAT
TCTTTTTTTAAAAAAATTTTATTGGGTATTTTCTTCATTTACATTTCCAA
TGTTATCCCAAAAGTCCCCCATACTCACTCCCCTACTTGCCTAACCATCC
ACTCTTTTTTTTACCCCCCCCCCCTCATCTCTGGGTCTTCAATTAAAAAA
AGGGGGGCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTTATCA
CAATTGCTCTCTAGTACTGGTTTAGGTCAGTCATGGTGATTCCACGAGAG
GTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATT
CCAGATGAATCTGCCCATTGCCTTTTCTAATTCATTGAAAAATTGAGTTG
GAATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATA
GCCATTTTTACTATATTGATCCTGCCAATCCATGAGCATGGGAGATCTTT
CCTTCTTTCCATCTTCTGAGATCTTCTTTAATTTCTTTCTTCAGAGACTT
GAAGTTCTTTTCATACAGATCTTTCACTTCCTTAGTTAGAGTATATTATT
TGTGACTATTGAGAAAGGTGTTGTTTCCCTAATTTCGTTCTCAGCCTGTT
TATCCTTTGTGGAACGAAAGGCCATTGACTTGTTTGAGTTATTTTTAAAT
CCAGCTACTTCCATGAACCTGTAAGATTAAATTTTAATTCCTTGAAGCCC
AAACAAGTTGAAAACTTCTTAAAGTTTTCCCGCATTTGGAAATTCCCCCA
TTGGAAAATTCTCCTTTACCTTTAACCTTAATATTTTTAAAAGTGGGGTA
TTCTCTTTTTTGGGGGGCGGGGGCTTTTATATCAAGGGAGCTTATACATC
AAAACTTTTGTATATGAAAGGGGCGGGTGAAAAAAAATTACTTCTCTTTT
ACATCTTTCCTAATACGAGTGATCCTATACAAGGATATCATTTTATTCCC
TCATTATTTTTCTACTATAAACGAACAGTGTGGG
NNNCCGCTGAAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGAGTTCATATATTCAAACACCCTCCTAA
AAAATTTGGAGTACTGTATGTGCCTGTACTTCAGGAGGCAGGAGTAGTGC
TATATCTTTCAAGCTACCCACCTTACTCTCTAGGTTCAGTGAGAAAACCA
GATTTAAGAGAACAAGATAGAAAAACACAGAAGTCAAACTCCCTTCTTTG
CCTTCACATTCATGAACTCATGCACATATGTGCATACATAGGCTCACACA
CATGGACATATCACACACAAGGACATACATACACACAAAACAAGAAGTAC
ATTAGCAAATTTAGATTAATTTAAAGAAGAATGCAGTGGAAAAGTTATTA
GTTTTATATTGTAAAAATAAGCTTACCACTTTTTTCTTCAAGAGCAGTAT
TTATGTTTTTTTACCCCCCCCTCATAGTTTATGTCTTTTCTTAAAAAAAA
GAGAGTTCTTTGGTTATTTTGGGACAGCATCAGGAATATCCATGGGAGCT
ACGCTACTTAAGATAATTAGCCTTAGTGTTCTTATTTATCCTTATTAAAT
GTGGTTGTGAAAGTATTAAAATTCAAATATCTGAGTTTCCAGACTTCAAT
TTCCAAGTATTTTAAATAAAAATAAAAGATATAGATAAAGATATAGATAT
AGATAGATTAATTATACTTTTCCAGCTTTAAATCAATGTTTATACTTCAT
ATTTTTTTTTACTTTATCATCTCTACATATTTATTACAAAGAATTCATAA
GTTATATGTTTGGATATTCAATATTTTTGTCACCTACAGTTTTAAAAACC
CAAGTATATAATTATTGTTAATAGTGGTAGCACTAAGCCTTTTTCACAAT
TACAAGATAAGTCTTATGATGTATTGGCTTGCATAAGTTCCTAAAACAAT
GTTTATTCTAATTTCTGTAAGAAAACAGTGTTTATCCTTGAATTACTGGA
AGCATACTATTATTTCTGCTGCCCTAAACCAAACCAACTGGTGGACAACC
TCTTCTTTAGGAACCCCTTGCCTAAATAAACATTTCCCAAGGAGCAAAAA
TTTTCCCCCAAAAAAATGAAATTTTCCCCATTTTCTCAAAATGGGAAAAG
GGGGCTCTGGTCTTAAATACTGGGTTATCCCCCCCTTTTAAAAAGGGCGA
TACCTCATTATTGTTTGTGGAAAATTTTTAACCAAGGAAAATCTTTCTAT
AAATCTCCTGAATTGGTCTCAAGTGGGAACAAACCAATAAGGGGGTGTGG
GTGCTCTCAACAACTTTTGAGGTACAAAAAAAAGAAGACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_l05.g1 MSMg01no305_l05.g1 CHROMAT_FILE:
MSMg01no305_l05.g1 PHD_FILE: MSMg01no305_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:58 2005
         (329 letters)



>mm_chr1_113100616_113101332
          Length = 717

 Score =  540 bits (279), Expect = e-158
 Identities = 313/329 (95%), Gaps = 12/329 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttggttattttgggacagcatcaggaatatccatgggagctacgctacttaagataa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 517 tctttggttattttgggacagcatcaggaatgtccatgggagctacgctacttaagataa 458

                                                                       
Query: 61  ttagccttagtgttcttatttatccttattaaatgtggttgtgaaagtattaaaattcaa 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttagctttagtgttcttatttatccttattaaatgtggttgtgaaagtattaaaattcaa 398

                                                                       
Query: 121 atatctgagtttccagacttcaatttccaagtattttaaataaaaataaaagatatagat 180
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 397 atatctgagtttccagacttcattttccaagtattttaaataaaa-taaaagatatagat 339

                                                                       
Query: 181 aaagatatagatatagatagattaattatacttttccagctttaaatcaatgtttatact 240
           |      ||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 a------tagata--gatagattaattatacttttccagctttaaatcaatgtttatact 287

                                                                       
Query: 241 tcatatttttttttactttatcatctctacatatttattacaaagaattcataagttata 300
           || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 286 tcgtatttttttt-actttatcatctctacatatttattacaaagaattcataagttat- 229

                                        
Query: 301 tgtttggatattcaatatttttgtcacct 329
            ||||||||||||||||||||||||||||
Sbjct: 228 -gtttggatattcaatatttttgtcacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 717
Length adjustment: 9
Effective length of query: 320
Effective length of database: 708
Effective search space:   226560
Effective search space used:   226560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)