Query= MSMg01no305_n09.b1 MSMg01no305_n09.b1 CHROMAT_FILE:
MSMg01no305_n09.b1 PHD_FILE: MSMg01no305_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:16 2005
(356 letters)
>mm_chr1_54163889_54164644
Length = 756
Score = 681 bits (352), Expect = 0.0
Identities = 352/352 (100%)
Strand = Plus / Minus
Query: 5 gaattcctgaagacaggtaccaacagtgacatcttttcttcaccttgcattcaggtttca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaattcctgaagacaggtaccaacagtgacatcttttcttcaccttgcattcaggtttca 321
Query: 65 tggtgtctgacaagctatggtacctagttgtttggagatgtgagtgactgatatgtttac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggtgtctgacaagctatggtacctagttgtttggagatgtgagtgactgatatgtttac 261
Query: 125 agctcactgctaaaacataggctagatgtggtgtggagaaaagagtttaccatttgagaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agctcactgctaaaacataggctagatgtggtgtggagaaaagagtttaccatttgagaa 201
Query: 185 gcagagtctaccaaccccacggccaggcatgtaaaactttcttttgagttattgtcaggg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gcagagtctaccaaccccacggccaggcatgtaaaactttcttttgagttattgtcaggg 141
Query: 245 ggtgtccagaagacatctcaaacagcataaactactaccattgcccaaacagttatcaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ggtgtccagaagacatctcaaacagcataaactactaccattgcccaaacagttatcaca 81
Query: 305 gccggcaatatgcttccctctctgggatgcactttggccatggaccactgag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gccggcaatatgcttccctctctgggatgcactttggccatggaccactgag 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_n09.g1 MSMg01no305_n09.g1 CHROMAT_FILE:
MSMg01no305_n09.g1 PHD_FILE: MSMg01no305_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:16 2005
(387 letters)
>mm_chr1_54007954_54008739
Length = 786
Score = 636 bits (329), Expect = 0.0
Identities = 371/385 (96%), Gaps = 1/385 (0%)
Strand = Plus / Plus
Query: 1 aacaaaacccatggtgggtgaacaaaagactcaaggtcaggaagctgatccaggcaacag 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 aacaaaacccatggtgggtgaacaaaagactcaagctcaggaagctgatccaggcaacag 260
Query: 61 cgtggctttgtgggaacagtgctaagcagcactagccaatgcctcacgtcttccaggcca 120
|||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| ||
Sbjct: 261 cgtggccttgtgggaacagtgctaagcagcactggccaatgcctcatgtcttccaggtca 320
Query: 121 accgcttgcaaaagtcaaaggcaacagagctagagctaacataagaacagtaaaagacag 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accgcttgcaaa-gtcaaaggcaacagagctagagctaacataagaacagtaaaagacag 379
Query: 181 tgattcaactttggtacagaagaaagatagaagtgaaagtggcccagagaacaagccagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgattcaactttggtacagaagaaagatagaagtgaaagtggcccagagaacaagccagt 439
Query: 241 ggaccacacttctcagggtttccacatggaaactgcaatattccccttgtgcttatgatg 300
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 ggaccacacttctcaggatttccacatggaaactgcaatattcccctcatgcttatgatg 499
Query: 301 cagggatgctctgctgcatctggctctgccctgttttgctgaaggccaaagggagtcata 360
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 500 cagggatgctctgctgcatctggttctgccctgccatgctgaaggccaaagggagtcata 559
Query: 361 gtctagaacttgttcacattatacg 385
| |||||||||||||||||||||||
Sbjct: 560 gactagaacttgttcacattatacg 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space: 293706
Effective search space used: 293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
