Query= MSMg01no306_i15.b1 MSMg01no306_i15.b1 CHROMAT_FILE:
MSMg01no306_i15.b1 PHD_FILE: MSMg01no306_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:21 2005
(654 letters)
>mm_chr1_47703083_47704135
Length = 1053
Score = 1156 bits (598), Expect = 0.0
Identities = 641/656 (97%), Gaps = 6/656 (0%)
Strand = Plus / Minus
Query: 1 ttagcatatcaagcagctatttctcactaaatattcttgacagctctcattacacttgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttagcatatcaagcagctatttctcactaaatattcttgacagctctcattacacttgat 598
Query: 61 ggatgagctttttatgtagtagtagttttcgaggaaaataaaatccttaagtgcactgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ggatgagctttttatgtagtagtagttttcgaggaaaataaaatccttaagtgcactgtc 538
Query: 121 atgcgtggctgaggaactggataactggatatctttgttcagcagtatatacttatgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgcgtggctgaggaactggataactggatatctttgttcagcagtatatacttatgttt 478
Query: 181 tttaatgagaaaaagtta-taaaaaaaccacaggtaagttaatgccagagtcaaaattct 239
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 477 tttaatgagaaaaagttattaaaaaaa--acaggtaagttaatgccagagtcaaaattct 420
Query: 240 gttaaaccctgaaagtataatttatgatctaatatcccaagagttttagttaagatatat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gttaaaccctgaaagtataatttatgatctaatatcccaagagttttagttaagatatat 360
Query: 300 tagggctagttttccaaataatctacaaacattaagaaaacaccataaactggtggtatc 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tagggatagttttccaaataatctacaaacattaagaaaacaccataaactggtggtatc 300
Query: 360 agtatatggggaac-tcgaaccaaacaagggaaataaaatgcaaaaatatgttaagtgct 418
| |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 attatatgggaaacgt-gaaccaaacaagggaaataaaatgcaaaaatatgttaagtgct 241
Query: 419 ttaagtaccttaagaaataagagatgtcaaaagagaaaggaaataataataattaaaaaa 478
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 240 ttaaataccttaagaaataagagatgtcaaaagagaaaggaaataataataatt-aaaaa 182
Query: 479 tgtgttggttcaaaaaatataaccatgttatgaaaaattaaatatcttcaaaagcacact 538
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 tgtgttggttcagagaatataaccatattatgaaaaattaaatatcttcaaaagcacact 122
Query: 539 tcaaaacctacagcaaaatttaacctagcctgcagatttatttttcctttacagtatatt 598
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 121 tcaaaacctacagcaaaatttaacttagcctgtagatttatttttcctttacagtatatt 62
Query: 599 ttcaaaaattgaattaatattaccatttgataagtaaaagaagtctagagagatat 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcaaaaattgaattaatattaccatttgataagtaaaagaagtctagagagatat 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_i15.g1 MSMg01no306_i15.g1 CHROMAT_FILE:
MSMg01no306_i15.g1 PHD_FILE: MSMg01no306_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:21 2005
(672 letters)
>mm_chr1_47530158_47531229
Length = 1072
Score = 1232 bits (637), Expect = 0.0
Identities = 664/673 (98%), Gaps = 2/673 (0%)
Strand = Plus / Plus
Query: 1 tctttggaatatgtgtgatattagagatcaaatacagaattgttgatgcctctagcatct 60
||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 tctttgggatatgtgtgatattagagatcaaatacagaattgttgatgcatttagcatct 260
Query: 61 tcagtgctgatgtggttctgctcaagagcactgtggagaatgcatgtattgccactgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtgctgatgtggttctgctcaagagcactgtggagaatgcatgtattgccactgtga 320
Query: 121 cacaggtgagggctaagtccttcccttctgcctggtgttggttttcttatattgagaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaggtgagggctaagtccttcccttctgcctggtgttggttttcttatattgagaaag 380
Query: 181 gagggctggggttttacacatttgccctaaaccattattaggtgcaagctattcctgagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggctggggttttacacatttgccctaaaccattattaggtgcaagctattcctgagg 440
Query: 241 aagaacaagtcatatgcttaaagcttgctctgctaagcactattaccagtatttacaaga 300
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 aagaacaagtcaaatgcttaaagcttgctctgctaagcactattaccagtagttacaaga 500
Query: 301 aattgtaatggtataccacagtggtcactatgattgttctccatttcacagatggactat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattgtaatggtataccacagtggtcactatgattgttctccatttcacagatggactat 560
Query: 361 ggggcatttgagttctcaaaacctgctgagactgaggaaaggggaattccttttgctaac 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggcatttgagttctcaaa-cctgctgagactgaggaaaggggaattccttttgctaac 619
Query: 421 atctattgtcatgattttagtatgactactgggtgaaagaaaaacacatatgtattccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atctattgtcatgattttagtatgactactgggtgaaagaaaaacacatatgtattccca 679
Query: 481 gaacattagtagtctctggtgtgctacttgagagtaatttctgataccagggagaacttg 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 680 gaacattagtagtctctggtgtgctacttgagagtaatttctgataccagagagaacttg 739
Query: 541 gttttgtgaaaatttatatttattaagtgagtaaaactgtccagaatttggttgcatata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gttttgtgaaaatttatatttattaagtgagtaaaactgtccagaatttggttgcatata 799
Query: 601 gagcgatttctttggaattttttttt-caattctagatgctctgtgtaagatgatgagtg 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 800 gagcgatttctttggaattttttttttcaattctagatgctctgtgtaagatgatgagtg 859
Query: 660 aatgtataatgta 672
||||||| |||||
Sbjct: 860 aatgtattatgta 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
