BAC Information

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BAC

Clone NameMSMg01-307A12
Chromosome1 (Build37)
Map Location 52,804,578 - 52,804,912
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik
Downstream geneInpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307A12.T7 (MSMg01no307_a12.b1)MSMg01-307A12.TJ (MSMg01no307_a12.g1)
ACCAG431518AG431519
length717714
length of high quality
(start - end)
335 (379 - 713)335 (380 - 714)
definitionCHROMAT_FILE: MSMg01no307_a12.b1 PHD_FILE: MSMg01no307_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:58 2005CHROMAT_FILE: MSMg01no307_a12.g1 PHD_FILE: MSMg01no307_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGAACGGAGG
CGCGGAATTCCATCCTTTACGAAAAAGAACTAATATCTCCTATCTTACAA
ATGAATCTCACAGTCTCCGCTTCTGTTTCTTTCTTGAAATTAAAAGCTGT
TTACGTGTAATATCGTCATTTCTTCACAGCCCATTTGCTTCATCATTTAT
AGCTCTAATGGCCACCTCTGCCACTCTGGAAGGGCTTGCCAAAACTCACT
AATTGATTATAAACTATCCTCTCGGTGTTACCTTGTTTCTCATAGACTTG
AGCAGGTTATATTTTCATTTTCTTACTANNTTCATAATTTATTTCCTTTG
TGATCCAAACATCACTCATTAGTGTGCAGCTTAGTTTCCAAGATTCCGTA
TATTTTCTATCACAGTTGATTACCACTTTTATTCCACTGTGGTTAGAAAA
AGCTTAAGGAATTACTTCAATTTTATTTGTTGAGACTTGTATTGGATCAC
AAAATGTGGCCTACTTGGGGGAAAAATTCCATAGGCTACAGAAAAGAATG
TGTTCTCTATAGTGTGTGGGTTCAATATTCTGCAGATAGCAGGCCCACTT
GATGTTTTTAGACACAATACTTTTTGGCTTTTTTTTTTTAGGTAATATGT
CCTTTGCTGAATGTGGGGTAATAAGGCAAATTGCTACTAATGTGTTAGAG
GGTGGTTGGCTTTAAGN
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTGCCTCTGCCTCTTCTATGCTAG
GGGCAGAGGTGCAGACTACCCTCCCTGACTTGCAAGAGGATTTTAGTTTC
TATGAGGGTTTGGTGCACTTTCTGATAACTAGTGACGTTGGTTGCTGTCT
TAGTCAGGATTTCTATTCCTGGACAAAACATCATGACCAAGAAGCAAGTT
GGGGAGGAAAGGGTTTATTCAGCTTACTCTTCCACACTGCTGTTCATCAC
CAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGAT
ACAGAGGCCTTGGTATGGATATTTCTCACCAGCTTGCTTCCTCTGGCTTG
CTCAGCTTAATTATACAACCCAAGACTACCAGCCCAGGGATGGTCCCACC
CACAAGGGGCCCCCCTCCCTTGATCACTAATTGAGAAAATGCCCCACAGC
TGGATCTCATGGAGGCATTTCCCTAACTGAAGCTCCTTTCTCTGTGATAA
CTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACTTTCATGTACTT
ACTGATCATTTAAATATTTTCTTTTACAAGGATTTAGAGGCCCTTTTCAC
TTGGCCTTCTATGTTGTTCCTGTTGACTTTATTGTGAAAGATCTTTTATT
GCTTGTGTATTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_a12.g1 MSMg01no307_a12.g1 CHROMAT_FILE:
MSMg01no307_a12.g1 PHD_FILE: MSMg01no307_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:59 2005
         (335 letters)



>mm_chr1_52804380_52805113
          Length = 734

 Score =  491 bits (254), Expect = e-143
 Identities = 317/340 (93%), Gaps = 13/340 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   gcttgcttcctctggcttgctcagc-t----taattatacaacccaagactaccagccca 57
           |||||||||| |||||||||||||| |    |  ||||| |||| |||||||||||||||
Sbjct: 199 gcttgcttcccctggcttgctcagcctgctctc-ttatagaacc-aagactaccagccca 256

                                                                       
Query: 58  gggatggtc-ccacccacaaggggccc-ccctcccttgatcactaattgagaaaatgccc 115
           | ||||| | |||||||||||||| || ||| ||||||||||||||||||||||||||| 
Sbjct: 257 gagatgg-caccacccacaaggggacctccc-cccttgatcactaattgagaaaatgcct 314

                                                                       
Query: 116 cacagctggatctcatggaggcatttccctaactgaagctcctttctctgtgataactcc 175
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 315 tacagctggatctcatggaggcatttccccaactgaagctcctttctctgtgataactcc 374

                                                                       
Query: 176 agc-tgtgtcaagttgacacaaaactagccagtactttcatgtacttactgatcatttaa 234
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agcctgtgtcaagttgacacaaaactagccagtactttcatgtacttactgatcatttaa 434

                                                                       
Query: 235 atattttcttttacaaggatttagaggcccttttcacttggccttctatgttgttcctgt 294
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 435 atattttcttttacaaggatttagaggcccttttcacctggccttctctgttgttcctgt 494

                                                   
Query: 295 tgactttattgtgaaagatcttttattgcttgtgtattcc 334
           ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 495 tgactttattgtgaaagatcttt-attgcttgtgtattcc 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 734
Length adjustment: 9
Effective length of query: 326
Effective length of database: 725
Effective search space:   236350
Effective search space used:   236350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)