XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGATCTTTCCCAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATG
CTTTTTCTGCATCTTACGACATGATCATGTGGTTTTTGTCTTTGAGTTTG
TTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTG
CATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGT
GTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATA
TTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTG
TGGTTTAGGTATCATAGTAACAGCGGCTTCATAAAATGAGTTGGGTAGAG
TACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTGGAATTAGA
TCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTGGTCCTGG
GCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGTG
ATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGGCACC
TGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGT
TGAGTATAGCCTTTTGTANAAGGATCTGATGGTGTTTTGGATTTCTTCAG
GATCTGTTGTTATGTCTCCCTTTTCATTTCTGATTTN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATAAGTACATTGGAATCTCACATCTATATG
GCTGCATCTAAATGGACCAAATTCATGTCTTCATACCTGCACAACAAAGG
TTTTATCCTTTGACATATCTCTCTGAACCTCTGTCATATTTCCTTACCTA
TAGAAAAATAATGAAGAATTGCTGACATTATAGCTGCTTATTAAGATTTG
AAAATTTGAAAAGAAATCATATACTAATATATATTTTTGCTTGTCTACAA
GATAGGTGAAATTCCCTAGCTACAGGTTATGAATGTTGATGATAGTAATT
ACATTCATAAATAGAAGATATCTGACTACTTATAGTATTAGAAAACAGAA
TCACTGAACTGAGTACCTTGGGCCTGTGATCACTCATGCTTAATTTACTG
ATGGTCTTACTGTGATGTTTCATAAGATCAGCAAAATATTTGCTATTAGA
TATTGACTACTCAACATTGCCTTTTTCATATTCAAATGAGATTTTATTGG
ATTTCCTGAAAGCTGAGTTTATTAAAATTGACCAGTAAATCTAGAATCAT
GTTATGTTCTATTTTGCCTGGGACTGTTCTTTTTCTCATTTTATATTATG
TGTACTTGCTATTATTTTATCATTTTGCTCTCAAAAGTGACATGCTTTCA
CCACCCTTTGAGAAGATTCATGATATAGTAAAGGAGTTTAGT

Query= MSMg01no307_b24.g1 MSMg01no307_b24.g1 CHROMAT_FILE:
MSMg01no307_b24.g1 PHD_FILE: MSMg01no307_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:06 2005
         (673 letters)



>mm_chr1_117303327_117304399
          Length = 1073

 Score = 1224 bits (633), Expect = 0.0
 Identities = 663/673 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataagtacattggaatctcacatctatatggctgcatctaaatggaccaaattcatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tataagtacattggaatctcacatctatatggctgcatctaaatggaccaaattcatgtc 814

                                                                       
Query: 61  ttcatacctgcacaacaaaggttttatcctttgacatatctctctgaacctctgtcatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ttcatacctgcacaacaaaggttttatcctttgacatatctctctgaacctctgtcatat 754

                                                                       
Query: 121 ttccttacctatagaaaaataatgaagaattgctgacattatagctgcttattaagattt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ttccttacctatagaaagataatgaagaattgctgacattatagctgcttattaagattt 694

                                                                       
Query: 181 gaaaatttgaaaagaaatcatatactaatatatatttttgcttgtctacaagataggtga 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 693 gaaaatttgaaaagaaatcatatacgaatatatatttttgcttgtctacaagataggtga 634

                                                                       
Query: 241 aattccctagctacaggttatgaatgttgatgatagtaattacattcataaatagaagat 300
           |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aatttcctagctacaggtcatgaatgttgatgatagtaattacattcataaatagaagat 574

                                                                       
Query: 301 atctgactacttatagtattagaaaacagaatcactgaactgagtaccttgggcctgtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||
Sbjct: 573 atctgactacttatagtattagaaaacagaatcactgaactgagtagtttgggtctgtga 514

                                                                       
Query: 361 tcactcatgcttaatttactgatggtcttactgtgatgtttcataagatcagcaaaatat 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcattcatgcttaatttactgatggtcttactgtgatgtttcataagatcagcaaaatat 454

                                                                       
Query: 421 ttgctattagatattgactactcaacattgcctttttcatattcaaatgagattttattg 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttgctgttagatattgactactcaacattgcctttttcatattcaaatgagattttattg 394

                                                                       
Query: 481 gatttcctgaaagctgagtttattaaaattgaccagtaaatctagaatcatgttatgttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gatttcctgaaagctgagtttattaaaattgaccagtaaatctagaatcatgttatgttc 334

                                                                       
Query: 541 tattttgcctgggactgttctttttctcattttatattatgtgtacttgctattatttta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tattttgcctgggactgttctttttctcattttatattatgtgtacttgctattatttta 274

                                                                       
Query: 601 tcattttgctctcaaaagtgacatgctttcaccaccctttgagaagattcatgatatagt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 273 tcattttgctctcaaaagtgacatgctttcaccaccctttgagaagattcatgatctagt 214

                        
Query: 661 aaaggagtttagt 673
           |||||||||||||
Sbjct: 213 aaaggagtttagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)