Query= MSMg01no307_g08.b1 MSMg01no307_g08.b1 CHROMAT_FILE:
MSMg01no307_g08.b1 PHD_FILE: MSMg01no307_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:26 2005
(686 letters)
>mm_chr1_42290995_42292080
Length = 1086
Score = 1272 bits (658), Expect = 0.0
Identities = 676/682 (99%)
Strand = Plus / Plus
Query: 5 gaattcactgatcatgccaccaaaagaaattagaggagaatagtcaaatcatcaaattta 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgatcacgccaccaaaagaaattagaggagaatagtcaaatcatcaaattta 264
Query: 65 agttagttacatatgacgagttacaaactgcataaggaattttatgtcagaagatgatac 124
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agttagttacagatgatgagttacaaactgcataaggaattttatgtcagaagatgatac 324
Query: 125 atcagagctcaggagacaaagagacaaagtaagagattaaattttagaagtaatttagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcagagctcaggagacaaagagacaaagtaagagattaaattttagaagtaatttagat 384
Query: 185 taaattgcagaattttacaatcacttttgggcttctccatttaaatactgttgtaactgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaattgcagaattttacaatcacttttgggcttctccatttaaatactgttgtaactgc 444
Query: 245 cattctaaggttaagggacctggtcaggtgggaggtgactgagcagcctcctgggcacac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattctaaggttaagggacctggtcaggtgggaggtgactgagcagcctcctgggcacac 504
Query: 305 acaacaggatcagaagcaataaggtcatgtgttattccaagatgaatcaaatctcaagat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaacaggatcagaagcaataaggtcatgtgttattccaagatgaatcaaatctcaagat 564
Query: 365 tccattctagtctaagctaccagtttagaaaactcatgcttgctggtaagtatgagcaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccattctagtctaagctaccagtttagaaaactcatgcttgctggtaagtatgagcaga 624
Query: 425 gaactaggctaaacaatgcctagtgacatcgttcttgttactacttgaataataataaca 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 gaactaggctaaacaatgcctagtgaaatcgttcttgttactacttgaataataataaca 684
Query: 485 ttattcatttgcactgagttcttttctctttttcatttttaggatttatttgtgttattt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttattcatttgcactgagttcttttctctttttcatttttaggatttatttgtgttattt 744
Query: 545 tatgtgtatgagtgtttttcctgagtgtatgtatgtgcacctcataggagccttgtacct 604
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 745 tatgtgtatgagtgtttttcctgagtgtatgtacgtgcacctcataggagccttgtacct 804
Query: 605 gaagaggttgtcaaaagatatggagcttcttgtaactgtagttacaagctcttgagcttg 664
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 805 gaagaggttgtcaaaagatatggagcttcttgtaactatagttacaagctcttgagcttg 864
Query: 665 taacaacttgaggttgtaagct 686
||||||||||||||||||||||
Sbjct: 865 taacaacttgaggttgtaagct 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_g08.g1 MSMg01no307_g08.g1 CHROMAT_FILE:
MSMg01no307_g08.g1 PHD_FILE: MSMg01no307_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:26 2005
(506 letters)
>mm_chr1_42357682_42358587
Length = 906
Score = 822 bits (425), Expect = 0.0
Identities = 451/469 (96%), Gaps = 16/469 (3%)
Strand = Plus / Minus
Query: 1 ttctgaaagcactcacaggctctgcaatccagcatgtctgtcctgggtctgctgtcctgg 60
||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 453 ttctgaaagcactcacaggctctgcaatctagcatgt--------------ctgtcctgg 408
Query: 61 gtctgctttgtgggactcactattggtgatacttgtcatttcacattatgttttactcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtctgctttgtgggactcactattggtgatacttgtcatttcacattatgttttactcat 348
Query: 121 tgacattttgagtttccatcctgtaaaattgcccattagcatccatagcaatagtaacgc 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 347 tgacattttgagtttccatcctgtacaattgcccattagcatccatagcaatagtaacgc 288
Query: 181 gaaaggctttcatattctttcccaactcaacacataaaccattagcatgagatggctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaaaggctttcatattctttcccaactcaacacataaaccattagcatgagatggctgcc 228
Query: 241 gagagagagaggaagattctgttttccttaagggttaagcctctgatgtgtagactacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 --gagagagaggaagattctgttttccttaagggttaagcctctgatgtgtagactacat 170
Query: 301 tccagtgaaaaaccacacagccaagaatatacagacagcacaaactgtactttctggggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tccagtgaaaaaccacacagccaagaatatacagacagcacaaactgtactttctggggc 110
Query: 361 agggtggggcgtggggggaagacataagttggagagcaaagagggggcaattttgaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 agggtggggcgtggggggaagacataagttggagagcaaagagggggcaattttgaaaga 50
Query: 421 tgtcagggaggaggaggaaagtatgatcaaaaggcaatgagcgagaggg 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 tgtcagggaggaggaggaaagtatgatcaaaaggcaatgagcgagaggg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
