NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTAACTTCCCTTACTCCACCCCACCCCCCCCCACCCCCCGGC
TGCTCAGTATTGGATCCTGTATCCCCCCTGTGTGATCACACACTCTGCCC
TTATCTCTCCTTATAGGACAGTCCTATTAAATACAGCCCACCCACACAGC
CTCAACTTGCCTTTCTGAGAACTGTTATTGTCAAACGATGACCCTGGGGT
TTGTAGCTCTAAGATGGAAGCTGGGTGAGGCAAAGATCAACCTTGGATGC
TCATAAAGGGATTTGGTTTGTTTGTTTGTTTTTTCTCAGATTATTTACAA
ATATACTTCCATGTGCAGGCAGGAGAGGAAATGATCACCTGTAACACTCA
GACACCTGAATACAGCCACCCCCAGGAAAAGGAAAGAGAAAAATTACTCT
GAGAGTCCCAGAATCTGTCGGTGAAAGCCAACACCTGCTGAGCCCCAGAG
ATGCCTGAGATGGTTAATGGAGAGGTGTACTATGGCTCAGGGCTTAGGAT
TTTAAGATATTTTAAAGGATTCTGTGCATCTGTCTTTGGGGTGCTTTTCA
CCTTACTGATATAGCTAGCAGGTGGGTTCTTATGTTCATGTATTCAAGCC
AATGATAGAACAAGTTCAGGGCAAAGAAGAGGATAGTTTGCTGGCAAGAC
CCATTTACAGGCN

CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTACTTTTTCCCCCTCTGTCTTCTAA
GAGCTGAGTTAACAGGCATTTGTGGGTATTCAGGTGTAGTAAGCCGGCCA
GCAGCCTACATGAACTGGGTATTTCATGACTTTGGGGGGTATAACTGCCC
CTGTTTGTCTTTAAAAGCCAATTTTTCAGAGTGCAATGAGCACGTTCAAC
AGTTACTTGTCCCATGGGGTTATAAGTAATTCCAGTCTTATGTTTCATAC
CAAATTCCTTACAAAATGAAGTAAAATTGTTGCGAGTATAGCATTAAAGG
CTTGTAAACAATGATCAATTACATTTCTAGAGGCCTCTCCCGTATGTAGA
GAAGCAAAAAGAAATCCTGAACAAGTGTCAATATAAACAGGTATATATTT
TAATTTTCTAAATTCCACATAATGAGTTACATCCATTTGCAGCAATTGAT
TAAGTATAACTCCTCAAGAATTAACACCATTATGTGGAAACAGGTAGGAA
CTGAGGACACTAAGAACAATTTTTTTTTTTACAATTTGATATGCATATTC
TCTAAAAATACCAAAATATTATCTTAAGCCATTACTGTTTTGACTATATA
AAGAACGAGATTATATGGCCAATTATTCTTATGTAAGGCCTGTAATCTGC
CTGAAATATN

Query= MSMg01no307_m04.b1 MSMg01no307_m04.b1 CHROMAT_FILE:
MSMg01no307_m04.b1 PHD_FILE: MSMg01no307_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:54 2005
         (641 letters)



>mm_chr1_6857900_6858939
          Length = 1040

 Score = 1081 bits (559), Expect = 0.0
 Identities = 610/631 (96%), Gaps = 9/631 (1%)
 Strand = Plus / Plus

                                                                       
Query: 14  cccccaccccccggctgctcagtattggatcctgtatcccccctgtgtgatcacacactc 73
           ||||| |||||||||||||||||||||||||||||| |   |||||||||||||||||||
Sbjct: 214 ccccc-ccccccggctgctcagtattggatcctgtagcaggcctgtgtgatcacacactc 272

                                                                       
Query: 74  tgcccttatctctccttataggacagtcctattaaatacagcccacccacacagcctcaa 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgcccttatctctccttataggacagtcctattaaatacagcccacccacacagcctcaa 332

                                                                       
Query: 134 cttgcctttctgagaactgttattgtcaaacgatgaccctggggtttgtagctctaagat 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cttgcctttctgagaactgttattgtcaaacgatgaccctggggtttgtagctctaagat 392

                                                                       
Query: 194 ggaagctgggtgaggcaaagatcaaccttggatgctcataaagggatttggtttgtttgt 253
           |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 393 ggaagctgggagaggcaaagatcaaccttggatgctcattgagggatttggtttgtttgt 452

                                                                       
Query: 254 ttgttttttctcagattatttacaaatatacttccatgtgcaggcaggagaggaaatgat 313
           || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 453 ttcttttttctcagattatttacaaatatacttccatgtgtaggcaggagaggaaatgat 512

                                                                       
Query: 314 cacctgtaacactcagacacctgaatacagccacccccagg----aaaaggaaagagaaa 369
           ||||||||||||||||||||||||||||||||||    |||    |||||||||||||||
Sbjct: 513 cacctgtaacactcagacacctgaatacagccac----agggaggaaaaggaaagagaaa 568

                                                                       
Query: 370 aattactctgagagtcccagaatctgtcggtgaaagccaacacctgctgagccccagaga 429
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 569 aattactctgagagtcccagaatctgacggtgaaagccaacacctgctgagccccagaga 628

                                                                       
Query: 430 tgcctgagatggttaatggagaggtgtactatggctcagggcttaggattttaagatatt 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgcctgagatggttaatggagaggtgtactatggctcagggcttaggattttaagatatt 688

                                                                       
Query: 490 ttaaaggattctgtgcatctgtctttggggtgcttttcaccttactgatatagctagcag 549
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttaaaagattctgtgcatctgtctttggggtgcttttcaccttactgatatagctagcag 748

                                                                       
Query: 550 gtgggttcttatgttcatgtattcaagccaatgatagaacaagttcagggcaaagaagag 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gtgggttcttatgttcatgtattcaagccaatgatagaacaagttcagggcaaagaagag 808

                                          
Query: 610 gatagtttgctggcaagacccatttacaggc 640
           || ||||||||||||||||||||||||||||
Sbjct: 809 gaaagtttgctggcaagacccatttacaggc 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space:   649930
Effective search space used:   649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)