BAC Information

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BAC

Clone NameMSMg01-307P05
Chromosome1 (Build37)
Map Location 173,880,267 - 174,043,000
singlet/doubletdoublet
Overlap geneVangl2, LOC100040199, Nhlh1, Ncstn, Copa
Upstream geneFcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
Downstream genePex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307P05.T7 (MSMg01no307_p05.b1)MSMg01-307P05.TJ (MSMg01no307_p05.g1)
ACCAG432160AG432161
length776814
length of high quality
(start - end)
131 (128 - 258)187 (181 - 367)
definitionCHROMAT_FILE: MSMg01no307_p05.b1 PHD_FILE: MSMg01no307_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:08 2005CHROMAT_FILE: MSMg01no307_p05.g1 PHD_FILE: MSMg01no307_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,880,267 - 173,880,397)(174,042,814 - 174,043,000)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGAATTCA
AAGAATTTTTCTGGAAACGTGATTTCTTGAGGTATAGATTTTCAGGAAAG
AAAGGATACTATATTCCCTTCAAGAATATATTATAAAGCAAAATGTGCAA
TTTGATAGGACATAGACAAAAGGATTTGTGCATATCAGTGGATTTCACTG
TGACAGTTCCATGAATGTGTTAGCGATCAGGCATTTCCACCAGCCTGCCC
TTGGGAACATCGTACCGCAGCGTACATCATTACCCACAGTCAAGTTTGAC
CAGTGCAACAGATATTTTGTGTGAAAGCACCCTCCCCTCCAGATCTCTCT
CTGGTTTTTTTTTTGTACCCCCCCCCCCCTCCCATTCCTTTATTGTCTCA
TTCATTCTACCCCCCCCCCTGATAAGAACAAACACTCTCTCTGCCCGTTT
GCCTCCATAAACCTCTTATACTACTTATGTTGCATGTTATACTTTCTTAC
CCGCCCACCTTGATTTGCCCCTCATAGGTATCCTCCCACTCTCCATACCA
TCCTAACAGTATAATTATATCCGCTTTTGCCCATATTCAAGCATCTCCCT
TTTCCTGATCTTTTCCTTACCCTCCCCTAATTTGTCTCTCTATTACTACT
TTTTAACAGTATCAACCCTTTTATCTTTTCTCTCTATTCTTTATAATTAC
ATTAAATGAACCTATGGTATTACCATTATATTACCCTGCAATTCTCCCCT
ACCCTGCGTAATACTAAGTTCTACCG
CCCCCCCCCCTCCTTTTTTTTTCTTTCCCCCATTTATCTTTNNNTTTCTA
TGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTATACTTGCAATCACTACTTTCATGC
TATTTTTCTGGAGAATTCTACCCGCAAGTGTGATCTGAATTCACAAGATG
AGGAGTCACACCATAGTGTTCTCACTCACCCTCCAAAGTTCACTAGTACA
GTACAATCACCTATCTACTGTGTACTCCACAGAGCCAGTGCTCTCCTAGT
CTAGTGCCTTAGCTTAGAAGCTCCACAGTAGCTTTAGGTACTTTAGGGCA
GAGGAAATAATAAAAGAATTATTGAAATACAGGACTGGAAAAGCAGCTTT
CATAAGCTTTANATAGATTGCCAAATCGTTTGCCCCTCAACATTTCATAA
GTACTTCATCCAGCCCCCCCTTGAGAAATGGAAAAAGAGTAGAGGCGGGG
GAGTTCTTGCTATCTAGCTTCTATCCTAGAAACTCTTAAATTCAGCATGA
ATGGTAACAAGAGCGGATCTATTGTGTACAACAGGAGTCAGGATTATGCG
AAATAGATATAACAACAGAAAAATAGTTCAATTTAAGTAAAAACATCCAA
AACTCTACTCTGGTTATAATGTTATTAAGGTAAAACGCTTCTGGGACTAG
CTTTTGGTTAATTAGGCCACGCTGGTCCCTGATCATCCTCTCCTCTATAT
CTACTTGTTATCGAACCATTTAGTCCTTTTTACCTCCATGTTTCTATTTT
TCCACGGCTATAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_p05.b1 MSMg01no307_p05.b1 CHROMAT_FILE:
MSMg01no307_p05.b1 PHD_FILE: MSMg01no307_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:08 2005
         (131 letters)



>mm_chr1_173880067_173880597
          Length = 531

 Score =  253 bits (131), Expect = 2e-72
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattataaagcaaaatgtgcaatttgataggacatagacaaaaggatttgtgcatatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattataaagcaaaatgtgcaatttgataggacatagacaaaaggatttgtgcatatca 260

                                                                       
Query: 61  gtggatttcactgtgacagttccatgaatgtgttagcgatcaggcatttccaccagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggatttcactgtgacagttccatgaatgtgttagcgatcaggcatttccaccagcctg 320

                      
Query: 121 cccttgggaac 131
           |||||||||||
Sbjct: 321 cccttgggaac 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no307_p05.g1 MSMg01no307_p05.g1 CHROMAT_FILE:
MSMg01no307_p05.g1 PHD_FILE: MSMg01no307_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:08 2005
         (187 letters)



>mm_chr1_174042614_174043200
          Length = 587

 Score =  354 bits (183), Expect = e-102
 Identities = 186/187 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatctgaattcacaagatgaggagtcacaccatagtgttctcactcaccctccaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgatctgaattcacaagatgaggagtcacaccatagtgttctcactcaccctccaaagtt 328

                                                                       
Query: 61  cactagtacagtacaatcacctatctactgtgtactccacagagccagtgctctcctagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 327 cactagtacagtacaatcacctatctactgtgtactccacagagccagtgctctcctagc 268

                                                                       
Query: 121 ctagtgccttagcttagaagctccacagtagctttaggtactttagggcagaggaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctagtgccttagcttagaagctccacagtagctttaggtactttagggcagaggaaataa 208

                  
Query: 181 taaaaga 187
           |||||||
Sbjct: 207 taaaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)