TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCTTATCTAAATATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGTGAGAAGCTAGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGACCACTTTCCCCCTACCTCTTCAAAATAGT
ATTTGAAGTCCTAGCCAGAGCCATTCGACAACAAAAGGAGATCAAGTGGA
TACAAATTGGAAAAGAGGAAGCCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAGCTCCTAAACCT
GATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGT
CAATGGCCTTTCTCTACACCCACAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAATCACAAATAATATAAAATACTTTGGGGT
GACTCTAACTAAGGAAATGAAAGATCTGTATGATAAGTACTTCAAGTCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATAGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAACATTGCAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCA
ACGAATTAAAAAGAGCAATCTGTAAATTCATCTGGAATAAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGATGTGGTATCTAATTGGTAGTT
TAATGACATAACATTTAAATTAAAAAATTATACACTGACAATAATGCTCT
CAGACTAATATTTTGTTTTCAAATTGATATTTTCATTTATCCAGTTCAAA
AGGATGTGTGGTCATGTTAAAGTTTAATGATTAAGATGAAAGATTATAGG
ATAGTGCTTGCCTTGACTTGAATCCTTATTACATGACTTTTACAGGACAA
GTTATTTTCAAATAAACTTCATATTGCTGCCTTAGCTGTGGTCTACATTT
TTAAATCTGCATGCCTTGTAAGACTGAAGAACAAATGGAGAAAAGATTAT
TCTGCACGTTTATAAGACCCCCCCTATATGAGATTAATATTTTGATAAGT
AAGCTGCACTAAAATTACCCTTTTTATGAAGGAAGACCTTAACTAATCAC
TAATCAAGGAGACATAAATCAAACAGAAAGTCTAAATAAAAGAACAGTTA
AAAAGAAGAGGTCATGAATTTGAAAGAGAACAATAGGGTTATATGAGGGC
TAGAAATAAGAAATGGAAGAGAGAAATGTTGTATTTATTGTCTCAAAAAT
AAAATGTATATTTTAATATTTAAAGAGAGAAAAGCACATTTTCCTGCCTT
GCTAAGCTCAAGCTTTGTTTTTTCCAACCACCAGGTTTAGA

Query= MSMg01no308_a13.g1 MSMg01no308_a13.g1 CHROMAT_FILE:
MSMg01no308_a13.g1 PHD_FILE: MSMg01no308_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:15 2005
         (660 letters)



>mm_chr1_81045691_81046754
          Length = 1064

 Score = 1116 bits (577), Expect = 0.0
 Identities = 643/669 (96%), Gaps = 12/669 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagatgtggtatctaattggtagtttaatgacataacatttaaattaaaaaattatacac 60
           ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 668 tagatgtagtatctaattggtagtttaatgacaaaacatttaaattaaaaaattatacac 609

                                                                       
Query: 61  ----tgacaataatgctctcagactaatattttgttttcaaattgatattttcatttatc 116
               | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 taattaacaataatgttctcagactaatattttgttttcaaattgatattttcatttatc 549

                                                                       
Query: 117 cagttcaaaaggatgtgtggtcatgttaaagtttaatgattaagatgaaagattatagga 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cagttcaaaaggatgtgtggtcatgttaaagtttaatgattaagatgaaagattatagga 489

                                                                       
Query: 177 tagtgcttgccttgacttgaatccttattacatgacttttacaggacaag-ttattttca 235
           |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 488 tagtgcttgccttgacttgagtccttattacatgacttttacaggacaagatt-ttttca 430

                                                                       
Query: 236 aataaacttcatattgctgccttagctgtggtctacatttttaaatctgcatgccttgta 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aataaacttcatattgctgccttagctgtggtctacatttttaaatctgcatgccttgta 370

                                                                       
Query: 296 agactgaagaacaaatggagaaaagattattctgcacgtttataagaccccccctatatg 355
           |||||||||||||||||||||||||||||||||||| |||||||||||  |  |||||||
Sbjct: 369 agactgaagaacaaatggagaaaagattattctgcatgtttataagacttcttctatatg 310

                                                                       
Query: 356 agattaatattttgataagtaagctgcactaaaattaccctttttatgaaggaagacctt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agattaatattttgataagtaagctgcactaaaattaccctttttatgaaggaagacctt 250

                                                                       
Query: 416 aactaatcactaatcaaggagacataaatcaaacagaaagtctaaataaaagaacagtta 475
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 249 aactaatcactaatcaaggagacataaatcatacagaaagtctaaataaaagaacagtta 190

                                                                       
Query: 476 aaaagaagaggtcatgaatttgaaagagaacaatagg---gttatatgagggctagaaat 532
           |||||||||||||||||||||||||||||||||  ||   ||||||||||||||||||| 
Sbjct: 189 aaaagaagaggtcatgaatttgaaagagaacaa--ggatggttatatgagggctagaaag 132

                                                                       
Query: 533 aagaaatggaagagagaaatgttgtatttattgtctcaaaaataaaatgtatattttaat 592
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 131 aagaaatggaagagagaaatgttatatttattgtctcaaaaataaaatgtatattttaat 72

                                                                       
Query: 593 atttaaagagagaaaagcacattttcctgccttgctaagctcaagctttgtttttt-cca 651
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 71  atttaaagagagaaaagtacattttcctgccttgctaagctcaagctttgtttttttcca 12

                    
Query: 652 accaccagg 660
           |||||||||
Sbjct: 11  accaccagg 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1064
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1054
Effective search space:   685100
Effective search space used:   685100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)