BAC Information

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BAC

Clone NameMSMg01-308C18
Chromosome1 (Build37)
Map Location 41,720,228 - 41,720,544
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308C18.T7 (MSMg01no308_c18.b1)MSMg01-308C18.TJ (MSMg01no308_c18.g1)
ACCAG432324AG432325
length7441,062
length of high quality
(start - end)
342 (71 - 412)---
definitionCHROMAT_FILE: MSMg01no308_c18.b1 PHD_FILE: MSMg01no308_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:25 2005CHROMAT_FILE: MSMg01no308_c18.g1 PHD_FILE: MSMg01no308_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATGCGCGGAA
TTCTTGCTTCTTACCGGATCTGTGTGAGCATGAATTCTATCACACAATTG
CCATGCTGAACCTACACTGCAGGCCCAAAATGTCTTCAAGACTGAGTTCA
GAATATGTATTAAGTAGAACTGATATTCACTGAAAATAGAAGGTGGCTAA
AATTGGCTCCCTGCAATGGACATTCCTATTAAGACACTTGAAAACCAGTA
ACTTAGCTTTTGATTCTAAAACATAACCAAATTACACCCTTATCAGTCAG
TAGGATTGCTTATCACTATTCTTACTGGCTTCCCAGAATTTCCTTGTTAG
CTGAACTTTGTCTATGCTTACCCCACCATATTCATGCAAACTCAATGCAA
GGGAGAAAAGCACCCCCCCCCGGCTCTCTCCCGACTTGTAGATTCTTCAA
AATGGCTTCCCTCCACCATGGTCAAATACCCTTGGTTAATATTATGTACC
TATCAGGTAGCTGTGATGGCTGCATACTGCTTCCTCCATCATTCTTATCC
ATGATTCTGACCCTGGTAGCTATTGGTTCATTTTCTCCACTGTTTCTTAN
ATGCTTAAGTGCCAGTCACAGTCAGCAAAGTCTCAGAACATCTGTACCCA
TAACACACCCTATATCTGGTCTCAGCTGCACTTGCTCTATCCCCTGTTTT
CCAAAGATACTATGTACCATCCACTAATATATTCTGAAACCTTT
NNNNGGGGGGGGGGGGGGGGGGGNNNNNNNCCCCCCCCCCNNCCCNNCCC
NACNNNNNNNNTAAACCCAACACTCTTTCGCAGATTGGGACGGNGNGGGG
AAGAAGNGNNNTTTCCAACAAAAAAAGNNNNGNNNNNGNGGGGGGAGGGG
NTTTTCCANAAAAAAAAGNNNGGGNNNNNAGAGGGAGGGGNNNNNNNNNN
NNNNANNGAAAAAAAAAAAANNNNNAATTTTGCCCCCCCAAAAAGAAGAG
AGGAGGGGGGGGGGNNNNGNGNNNGNNNGGNNGNNNNGGGGNNGGGGGGG
GGGGGGGGGGGGNGAAGGANGGGAGGANANGAGGGGGAAAGGAGAAAGGN
NNNGAGNGNAGGGNAAAAAAGAGAAGAGGGGGGGGAGGNGGNNGNGGNNN
NNNNAAAGGAGGGAGATTTTTTTTTGTAAGNAAAGAGAANGNAAGGGGAA
AAGAGGAGAGAGAGGAAAGAAGGGAAGAAAAGGGGGGAAGGAGGGAGGAA
AGGAAAAAATTAAGGTGGNTTTAAAAAAAAGGAGAAGAGAAAGAGGAGGG
AAGAAAGAAGAGTTATAGGGGTGGGGATCCCCAAANNCCCCGNNNNCCCC
GGNGGGGGGNGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNA
AAAAAAAAAAAAAAAAAAAAGANNNNNNNNNNGGNNNNNNNNNGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGNNGNNNNNGGNNGGGGNNNGGGGGG
GGGGGGNNGNGGGGGGGGGGGGGGGGGGGNNNGGGGGGNNNNGGGGGGGG
GGGGGGGNNNNNNNGGNGNGGGGGGGGGGGGGGGGNGGGGGGGGGGNGGG
GGGGGGGGGGGGGNGNNGGGGGGGGGGGNNNGNNGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGG
GTTTTTTTTTTTTTTTGGGGNGGGGNNNGGGGGNGGGGGGGGGGGGGGTN
NNTGGGGGGGTTGGGGGGGGGGGGGGGGGGGTGGGGGTTGTGGGGGGGGG
GGGGGGGGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_c18.b1 MSMg01no308_c18.b1 CHROMAT_FILE:
MSMg01no308_c18.b1 PHD_FILE: MSMg01no308_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:25 2005
         (342 letters)



>mm_chr1_41720028_41720769
          Length = 742

 Score =  478 bits (247), Expect = e-139
 Identities = 307/337 (91%), Gaps = 20/337 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtgagcatgaattctatcacacaattgccatgctgaacctacactgcaggcccaaaa 60
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 201 tgtgtgagcatgaattctatcacacaattgccatgctgaaactacactgcaggccccaaa 260

                                                                       
Query: 61  tgtcttcaagactgagttcagaatatgtattaagtagaactgatattcactgaaaataga 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttcaagactgagttcagcatatgtattaagtagaactgatattcactgaaaataga 320

                                                                       
Query: 121 aggtggctaaaattggctccctgcaatggacattcctattaagacacttgaaaaccagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtggctaaaattggctccctgcaatggacattcctattaagacacttgaaaaccagta 380

                                                                       
Query: 181 acttagcttttgattctaaaacataaccaaattacacccttatcagtcagtaggattgct 240
           |||||||||||||||||||||||||||||||||||||||||||||  |  |||       
Sbjct: 381 acttagcttttgattctaaaacataaccaaattacacccttatca--c--tag------- 429

                                                                       
Query: 241 tatcactattcttactggcttcccagaatttccttgttagctgaactttgtctatgctta 300
             |||  |     ||||||||||||||||||||||||||| |||||||| |||| |||||
Sbjct: 430 --tca--a-----actggcttcccagaatttccttgttagatgaactttatctacgctta 480

                                                
Query: 301 ccccaccatattcatgcaaactcaatgcaagggagaa 337
             | |||||||||||||||||||| ||||||||||||
Sbjct: 481 gtcaaccatattcatgcaaactcagtgcaagggagaa 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)