BAC Information

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BAC

Clone NameMSMg01-308F17
Chromosome1 (Build37)
Map Location 161,112,464 - 161,112,745
singlet/doubletsinglet
Overlap genenone
Upstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik, EG240853
Downstream geneLOC664972, Rfwd2, EG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308F17.T7 (MSMg01no308_f17.b1)MSMg01-308F17.TJ (MSMg01no308_f17.g1)
ACCAG432461AG432462
length723716
length of high quality
(start - end)
314 (46 - 359)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no308_f17.b1 PHD_FILE: MSMg01no308_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:39 2005CHROMAT_FILE: MSMg01no308_f17.g1 PHD_FILE: MSMg01no308_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCCTCTTGCAAATGAAGCATTCTTAGCACCTCAGCCCCAGCCAA
TGATGCACACTCACCCATAAACCCCCACTGACTCCCCAAGGTTTGTATAG
CCCTTGTTAACCCCCAATAAAAGAGAACGGTCTCTAGAGAAGGATATTTT
TCCCTCACTCACCGAACAGAGTTCCTGTCTAAACCCACCAGCTAAGCTTC
TTTCCTTCCACTCCGTCCAGTGTGCAGCTGTGTCTGGATACCCCAAGGGT
AGAAGAAGCAGACTTGGCCCATTATGGCTGGGAGTGGGTGCTGGAGAATT
GCAGGCTATCTGTATTCTACTACCCGCCGCCACACTCCTCCCCAAAGGGA
AAGCACTTCAAACTTACCCCCACAAATAATCCTCACTAAAATAATATTTA
TCTTTCAATGATTTTCCTCATGTTTCCCACAATGCATCACCCTGTAATTT
CCAAACTTCTTTCCTTTGCTCAATCGCCTCTCAAAACTCTTTCATCCTTT
GCCTATAGTCTTCCAAGCCATCTTTGAATTTTAACCTTTCCCTGGAGTTC
CAAGAAAATACAATGTCATCAACAATGAAAAGTATACACCTTTCCGAAGA
AATCAAAAAATAAATGCTAGATCTCATAAATGTGTTACGAGGAATGAAGC
CTGTTTGATGGACTTCTTAATTN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGGGTGCCTGGGTCCCGATGGTCTT
AGCTACTCCCACTGTTTGGGCAGATGTTGTGTCCTCCTCACCTCTGATCC
TATGGCACTTATTTTTAAATTGTCTCTGAAAAGAGGATAGATCCAAAACT
TGTCGATTATTTTAATTGATGATGTTGAAAAACATGATTATTCATCCTGA
GATCAAGGCTATATAGGTAGAGTTTAGTTAATTTAGGGAAGCACCAAATA
AATAAGAAATCTTTGGCTTGTTCTGTCCATCTGCAGATTATAAATGCTAT
CTAAAATCTTANGTCCNTTCCAGGTCATGACCACTAGGTGCCATGGGGCT
AGCTGCTGTAGTGCCCCCCACAAAAAAAAAAAATGTCTATACTTTAGCTA
TAACAGTTTTGAAACTTGTTCCACTGTGGATCATGTTAGAAATCAAGGCT
ATTAATCAAATTGCACTTTGGAGAGTCTAAACATTAGCAAAGATGACTCA
CTAGGGTTGTCACTGGAATGACCTCCCTAAGATCAACTTGTCAAGTGGCT
GTATTTGAAGTTTTGAGGGTTTTCACAAGTACATAAATTATGTATACAAG
ACACAGTATGGCAAATAATTTTCTCATCATGGATCAGCTTTGATTTATTG
GCGACAGATTTTGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_f17.g1 MSMg01no308_f17.g1 CHROMAT_FILE:
MSMg01no308_f17.g1 PHD_FILE: MSMg01no308_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:39 2005
         (284 letters)



>mm_chr1_161112184_161112867
          Length = 684

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggtgcctgggtcccgatggtcttagctactcccactgtttgggcagatgttgtgtcc 60
           |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 562 ctgggtgcctgggtcccgctggtcttagctactcccagtgtttgggcagatattgtgtcc 503

                                                                       
Query: 61  tcctcacctctgatcctatggcacttatttttaaattgtctctgaaaagaggatagatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcctcacctctgatcctatggcacttatttttaaattgtctctgaaaagaggatagatcc 443

                                                                       
Query: 121 aaaacttgtcgattattttaattgatgatgttgaaaaacatgattattcatcctgagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaaacttgtcgattattttaattgatgatgttgaaaaacatgattattcatcctgagatc 383

                                                                       
Query: 181 aaggctatataggtagagtttagttaatttagggaagcaccaaataaataagaaatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaggctatataggtagagtttagttaatttagggaagcaccaaataaataagaaatcttt 323

                                                     
Query: 241 ggcttgttctgtccatctgcagattataaatgctatctaaaa 282
           ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 322 ggcttgtcctgtccatctgcagattataaatgctatctaaaa 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)