Query= MSMg01no308_g21.b1 MSMg01no308_g21.b1 CHROMAT_FILE:
MSMg01no308_g21.b1 PHD_FILE: MSMg01no308_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:45 2005
(647 letters)
>mm_chr1_57201743_57202789
Length = 1047
Score = 1125 bits (582), Expect = 0.0
Identities = 628/644 (97%), Gaps = 1/644 (0%)
Strand = Plus / Plus
Query: 1 tacacatcctttactgtccccagaagagacagaaatgcatctgtttaatgtgtgagctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tacacatcctttactgtccccagaagagacagaaatgcatctgtttaatgtgtgagctac 261
Query: 61 agatgtatgtgcgctattgtagtacttatagaagtcagtcctgtgctctcattccgggtc 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 262 agatgtatgtgcgctattgtagtacttacagaagtcagtcctgtgctctcattccgggtc 321
Query: 121 ccgcgggttcaattctgatcaccaggcttgggcggcaagcacccctagccactgagaagt 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccgcgggttc-attctgatcaccaggcttgggcggcaagcacccctagccactgagaagt 380
Query: 181 ccagcaacatcagacactcttaccaaggacaaggaacagagaattacgtggactgcacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagcaacatcagacactcttaccaaggacaaggaacagagaattacgtggactgcacct 440
Query: 241 caacagataaggatttttatcctctcttgcttaccttcttccctcagagggtgtcactgt 300
||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 caacagataaggacactcaccctctcttgcttgccttcttccctcagagggtgtcactgt 500
Query: 301 gttctgcacacaaacctggtcatgggtgaacgtctgagagttagggatgaatccatcctg 360
||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 501 gttctgcacacaaacttggtcatgggtgaacatctgagagttagtgatgaatccatcctg 560
Query: 361 gcacagccatagtctgttctgggcttggtgtctgttaccagtgtcttcagatacctcagt 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcacagccatagtctgctctgggcttggtgtctgttaccagtgtcttcagatacctcagt 620
Query: 421 ttctccacatggggaaacagacctgggaaaagaatagcttgattcccccaggccactaaa 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctccagatggggaaacagacctgggaaaagaatagcttgattcccccaggccactaaa 680
Query: 481 aagaagaggtttctcgtgttcatgtcacaaaggtgtttgaaactatagatcanagattgg 540
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 aagaagaggtttctcatgttcatgtcacaaaggtgtttgaaactatagatcaaagattgg 740
Query: 541 tgaaaagatctccttaggcttctatatcatcatggcttctcagngtttaggcaggagtgc 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 tgaaaagatctccttaggcttctatatcatcatggcttctcagtgtttaggcaggagtgc 800
Query: 601 tgtcttatacaaagcagcgactaccagaagcttcccattctttc 644
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtcttatacaaagcagcgactaccagaagcttcccattctttc 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_g21.g1 MSMg01no308_g21.g1 CHROMAT_FILE:
MSMg01no308_g21.g1 PHD_FILE: MSMg01no308_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:45 2005
(619 letters)
>mm_chr1_57208776_57209794
Length = 1019
Score = 980 bits (507), Expect = 0.0
Identities = 531/539 (98%)
Strand = Plus / Minus
Query: 81 atgaatttttagctgatattgcggacacaaaaaattaaaaagtttttaaaatgacctcag 140
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 1019 atgaatttttagctgatattgcagacacaaaaaattaaaaagtttttaaaatgaccccag 960
Query: 141 tcagccactgtaacctcaggattcctcctcccccttctgggctactcccaaatttctgag 200
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 959 tcagccactgtaacctcaggattcctcctccccctgctgggttactcccaaatttctgag 900
Query: 201 ccacagaaacagttattaaatatttcttactcttttatacccataaatgtggggatagtt 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ccacagaaacagttattaaatatttcttactcttttatacccataaatgtggggatagtt 840
Query: 261 tttctatacagcaacagacatgttctcattaaaattttatctttaaagtcaccaatatcc 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tttctatacagcaacagacatgttctcattaaaattttatctttaaagtcaccaatatcc 780
Query: 321 atctgttcgagtacgtcaggctttccaaaccatgttaagatgtataataaatgcaagacg 380
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 atctgttcgagtacatcaggctttccaaaccatgttaagatgtataataaatgcaagact 720
Query: 381 gtgcttcttgattttgctcactctttcatataagacccccttgtgccagtttggaagcta 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gtgcttcttgattttgctcactctttcatataagacccccttgtgccagtttggaagcta 660
Query: 441 tgactatggaagttcaggctgtggagaaggcgggttcatgtcctcccggctgtggaggga 500
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 659 tgactatggaagttcaggctgtggagaaggcgggttcatgtcctcccagctgtggaggga 600
Query: 501 aagaagcagggctagaagggtattgtgtagctgtgaaggttggggagcaggtgaccacag 560
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aagaagcagggttagaagggtattgtgtagctgtgaaggttggggagcaggtgaccacag 540
Query: 561 tgagtgggtgaccctgttacagtatagttcttttagggtgaacacaagtaaccctgagg 619
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgagtgggtgaccctgttacagtatagttcttttagggtgaacacaagtaaccctgagg 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
