Query= MSMg01no308_h03.b1 MSMg01no308_h03.b1 CHROMAT_FILE:
MSMg01no308_h03.b1 PHD_FILE: MSMg01no308_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:46 2005
(327 letters)
>mm_chr1_9920148_9920874
Length = 727
Score = 576 bits (298), Expect = e-169
Identities = 316/324 (97%), Gaps = 5/324 (1%)
Strand = Plus / Plus
Query: 5 gaattcttgtgtattgtttgttagagggagtagaaactagtgcaatcattgtgaaaactg 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcttgtgta----ttgttagagggagtagaaactagtgcaatcattgtgaaaactg 264
Query: 65 cttgggcaatttctatgaggctaaggattcacaatccaggggaaagaaaagtataactca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgggcaatttctatgaggctaaggattcacaatccaggggaaagaaaagtataactca 324
Query: 125 atagttaatcataactctacatatcagtaaaagt-aagcatacttctgagtatgcctgga 183
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 325 atagttaatcataactctacatatcagtaaaaataaagcatacttctgagtatgcctgga 384
Query: 184 agtcattccagagaggataaatcagcccaccctgcatggaggtggcacctttactgaagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtcattccagagaggataaatcagcccaccctgcatggaggtggcacctttactgaagg 444
Query: 244 taaagagcagaacatagccaggcagtggtggcgcacaccttgaatcccagcacttgggag 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 taaagagcagaacatagccaggcagtggtggagcacaccttgaatcccagcacttgggag 504
Query: 304 gcaggggcaggcagatttttgagt 327
|||||||||||||||||| |||||
Sbjct: 505 gcaggggcaggcagatttctgagt 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_h03.g1 MSMg01no308_h03.g1 CHROMAT_FILE:
MSMg01no308_h03.g1 PHD_FILE: MSMg01no308_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:46 2005
(292 letters)
>mm_chr1_10096709_10097400
Length = 692
Score = 549 bits (284), Expect = e-161
Identities = 290/292 (99%)
Strand = Plus / Minus
Query: 1 atggaaagtcacatcaagacttgaaaattatgagaactttttcccctagaaacctgttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atggaaagtcacatcaagacttgaaaattatgagaactttttcccctagaaacctgttct 433
Query: 61 ataaaggttcttttaaatctcggcactgtagaaaacactatcttttaccttaatttccct 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ataaaggttctcttaaatctcggcactgtagaaaacactatcttttaccttaatttccct 373
Query: 121 caaaatttgaatttttgtaacaactaaaggaaagaaatatggatgaaataaatcctttgg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 372 caaaatttgaatttttgtaacaactaaaggaaagaaatatggatgaaataaatcctttag 313
Query: 181 ggggagaacttttctcacaactacagggaactagtactattagaaaatagacatgtgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggggagaacttttctcacaactacagggaactagtactattagaaaatagacatgtgact 253
Query: 241 agataccttagtaaccacacaaaaacaactgaagccaaactagtattagatt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agataccttagtaaccacacaaaaacaactgaagccaaactagtattagatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
