BAC Information

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BAC

Clone NameMSMg01-308H17
Chromosome1 (Build37)
Map Location 51,949,900 - 51,950,143
singlet/doubletsinglet
Overlap geneMyo1b
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneEG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308H17.T7 (MSMg01no308_h17.b1)MSMg01-308H17.TJ (MSMg01no308_h17.g1)
ACCAG432551
length744736
length of high quality
(start - end)
---272 (76 - 347)
definitionCHROMAT_FILE: MSMg01no308_h17.b1 PHD_FILE: MSMg01no308_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:48 2005CHROMAT_FILE: MSMg01no308_h17.g1 PHD_FILE: MSMg01no308_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAACTTCTGGTCTCCAAACTCAGGA
CGAGAGCAAGGTGTACACAGACTGGCAGAGAAGAAATGCAGCAGAAACGG
CTTTCTTCTTTTGACCTTAAGAGCACACATGCTCTTCCACCGGTCTTTCC
CCAAGGATGTCCAGGTACCTAATTTAGTCACCTCATTTGCTAAAGACCTC
CTCCATTCTCCTGGATTCCTACCTTTAATCTCCGTTCTTCTCTCTGCCAA
CAAACAGGATCTAGAATCCCCTGTTTTTTTTCTTCTGGAAGTGTCAGAGT
GGGAGNATCTGTTTGGGTTGNTTCAGAACCCCNTACCTGTGTTGTTTATT
AGAGAGTTGAGGGTTCCCCCCCCAAATGGGAGCCTACATCCCTCTCGGGG
GGCGTCCTGACTGTGCGTACAGTGTGTCCACTTCCCTCACCATGCCATGA
CTTCTCTGTGACAGTCTGCACACTTGAATGGTGAGCCAACATAAATGCTT
CCTTTTTTTTAAGCAGCCCTTGCAACTTACTTTGTGACAGCAGTAAAGTA
CCTAGCACACATTCCCTACGAGAATGCACAGTCGGCACCAGGTCCCTACT
GTCACTTCCCAGAGCTAGGTCCACTAAGCCATGGCCCGAATTTCCAGAAG
GACCTCTCATCAAGGCTCACCCAAACCGTTATATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_h17.g1 MSMg01no308_h17.g1 CHROMAT_FILE:
MSMg01no308_h17.g1 PHD_FILE: MSMg01no308_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:49 2005
         (272 letters)



>mm_chr1_51949700_51950371
          Length = 672

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacttctggtctccaaactcaggacgagagcaaggtgtacacagactggcagagaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacttctggtctccaaactcaggacgagagcaaggtgtacacagactggcagagaagaa 260

                                                                       
Query: 61  atgcagcagaaacggctttcttcttttgaccttaagagcacacatgctcttccaccggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcagcagaaacggctttcttcttttgaccttaagagcacacatgctcttccaccggtc 320

                                                                       
Query: 121 tttccccaaggatgtccaggtacctaatttagtcacctcatttgctaaagacctcctcca 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tttccccaaggatgtccaggtacctaatttaatcacctcatttgctaaagacctcctcca 380

                                                                       
Query: 181 ttctcctggattcctacctttaatctccgttcttctctctgccaacaaacaggatctaga 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctcctggactcctacctttaatctccgttcttctctctgccaacaaacaggatctaga 440

               
Query: 241 atcc 244
           ||||
Sbjct: 441 atcc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)