BAC Information

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BAC

Clone NameMSMg01-308I20
Chromosome1 (Build37)
Map Location 179,414,787 - 179,415,075
singlet/doubletsinglet
Overlap genenone
Upstream geneCep170, Sdccag8, LOC666235, Akt3, Zfp238
Downstream geneEG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308I20.T7 (MSMg01no308_i20.b1)MSMg01-308I20.TJ (MSMg01no308_i20.g1)
ACCAG432601AG432602
length747753
length of high quality
(start - end)
645 (45 - 689)291 (78 - 368)
definitionCHROMAT_FILE: MSMg01no308_i20.b1 PHD_FILE: MSMg01no308_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:54 2005CHROMAT_FILE: MSMg01no308_i20.g1 PHD_FILE: MSMg01no308_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTTTCCCTGATTTT
AGTTACTTCATCTTTTGCATTTTTAAATTTATTGATGCTTACTTTTTAAT
TGAATGTTTTGAGAATTTTATACAAGAGTATTATAGTTGTATCACTTCTA
TCCCTTTCTTTCCTCTAATTCTTTCTGTGTCCCCTACCTCTCAAATTCAA
TTATTATTGTTTTACACACACACACATGCACACACAAACATACACATACT
CACGTGCACACTCAAACATACACACACATATACACAAACACAATCTGATG
AGTCCGTTTAGACTTGCTCACATGCACATGTGTTTAGGGCTGACGAGCTG
ACCACTCAGGACTTAGCCTATTTAGAAACTCGTCCCTGGAAAAGATTGAC
TTTCTCTCTTAGCAGCTATTAATCGGNTGTAGCTCTTCCTCTAGGTGTGG
GACCTTGTGAGATTTTGCCTATCAAGATTCTGAGCCGATGTCTTCAAGAA
GCTAGGTTCCAGGCCACACGTTCCTCACAGCTTTCTCAACTACAAACAAC
AAGTGATAGCGCCCCAGTATTTAATTCTGCTTTTTATAAATGCAGGG
ACTGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTTCTTTAATGACAGAGCGGA
CACAGAGGGTTCAGTAGTATAATTAATACTCTGAATGGCATACATGACAA
GAATCTGCTGGGCGTTTAGGCTCAATTTGTGGGCTATTCAGGGGATTTCC
CAGCATCACGGAACAGGTTAATTAAGGGAAGTTGCTGGAGGGGGCTCCCT
TGGTGTGGGGAAGGGAGGGGTCACAGCGTTTGAAGCTCCAGCACTGACTG
GCATCCTTACCCAGCACTGGAAGGCTCTTTGTTTCCGAAAAAGGGAGCTT
TTCCTTGCTAGTTGCATTTTGGGTTCCTACNANTCCCTNTCTCTCATAGT
TAGTGTGNTGAGGNCTTTTTTCCCCCCCCCCCAAANNAAAACNAAAAGGG
GGGCGGGCCGTGGTTCTCCTTCCAGCAATAGTGGAAGGAGACTGAGTAAG
GCCCTTCCCAGTCCACGCAGAACTTGTCTATTGGGAAGGTAAGGACTAGA
AGGAGATTCTGGCTCTGTTTCCCAGAACTAATGGTCGGCTTCTGCTGAGG
CTATTTGCACTGTAAACGCAATTAACCAAACACCCGCATATGACCGCTCA
CCGGCACCCAGGAGAGTCCTTCTTTCAGGCATACTCTATAAATAACCCTT
TATCGCACAACTTGTTATCCTGAACATGCCGTAATTGTCTCACTCCCCTG
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_i20.g1 MSMg01no308_i20.g1 CHROMAT_FILE:
MSMg01no308_i20.g1 PHD_FILE: MSMg01no308_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:54 2005
         (291 letters)



>mm_chr1_179414587_179415277
          Length = 691

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttctttaatgacagagcggacacagagggttcagtagtataattaatactctgaatg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggttctttaacgacagagcggacacagagggttcagtagtataattaatactctgaatg 260

                                                                       
Query: 61  gcatacatgacaagaatctgctgggcgtttaggctcaatttgtgggctattcaggggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatacatgacaagaatctgctgggcgtttaggctcaatttgtgggctattcaggggatt 320

                                                                       
Query: 121 tcccagcatcacggaacaggttaattaagggaagttgctggagggggctcccttggtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccagcatcacggaacaggttaattaagggaagttgctggagggggctcccttggtgtg 380

                                                                       
Query: 181 gggaagggaggggtcacagcgtttgaagctccagcactgactggcatccttacccagcac 240
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gggaaggggggggtcacagcgtttgaagctccagcactgactggcatctttacccagcac 440

                                                            
Query: 241 tggaaggctctttgtttccgaaaaagggagcttttccttgctagttgca 289
           ||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaggctctttggatccgaaaaagggagcttttccttgctagttgca 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)