Query= MSMg01no308_o14.b1 MSMg01no308_o14.b1 CHROMAT_FILE:
MSMg01no308_o14.b1 PHD_FILE: MSMg01no308_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:21 2005
(300 letters)
>mm_chr1_40707454_40708153
Length = 700
Score = 565 bits (292), Expect = e-165
Identities = 298/300 (99%), Gaps = 2/300 (0%)
Strand = Plus / Minus
Query: 1 gcccttagggaaagacaaaaccccaagagcaaggacttacacacacacacacacacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 597 gcccttagggaaagacaaaaccccaagagcaaggacttacacacacacacacaca-a-ac 540
Query: 61 acacacacacacacacacacacacacacacacacacacaaagttagtctcagaaacacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acacacacacacacacacacacacacacacacacacacaaagttagtctcagaaacacta 480
Query: 121 gtcatactggctttcagagacaaacatgccctgagtcctaattccatatcatggacgata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtcatactggctttcagagacaaacatgccctgagtcctaattccatatcatggacgata 420
Query: 181 acaagaccaaacaaacactgacctccggatccttcagctagaagggtgcattgtgtactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acaagaccaaacaaacactgacctccggatccttcagctagaagggtgcattgtgtactt 360
Query: 241 aaacttatagttggtgtgtgtgcttccagttgtaggagggtcacttgtctctagaaggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaacttatagttggtgtgtgtgcttccagttgtaggagggtcacttgtctctagaaggtt 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_o14.g1 MSMg01no308_o14.g1 CHROMAT_FILE:
MSMg01no308_o14.g1 PHD_FILE: MSMg01no308_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:22 2005
(288 letters)
>mm_chr1_40550356_40551043
Length = 688
Score = 503 bits (260), Expect = e-147
Identities = 281/288 (97%)
Strand = Plus / Plus
Query: 1 catggccaggtgcagtctgtagcaagggcagaaatgaagacatgtctaggaaagaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggccaggtgcagtctgtagcaagggcagaaatgaagacatgtctaggaaagaaaaaa 260
Query: 61 ttgtagccaacactatgcttttagttttgacagaacatgaaaagaaccaacgagccaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtagccaacactatgcttttagttttgacagaacatgaaaagaaccaacgagccaaag 320
Query: 121 actactaaaacacagtcaattgatgcatatagttggagaaacgatggttccgctaactca 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actactaaaacacagtcaactgatgcatatagttggagaaacgatggttccgctaactca 380
Query: 181 ttattatcctaaatgaccacttatatagtgatagtattgctaattagagatcaaaagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 ttattatcctaaatgaccacttatatagtgatagtattgctaattagagataaaaagaat 440
Query: 241 taatcacctttatttcaggtttcccaccaagcatctcactatccacct 288
|||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 441 taatcaccaggaaatcaggtttcccaccaagcatctcactatccacct 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
