BAC Information

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BAC

Clone NameMSMg01-308P03
Chromosome1 (Build37)
Map Location 173,458,214 - 173,458,498
singlet/doubletsinglet
Overlap geneItlna
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2
Downstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308P03.T7 (MSMg01no308_p03.b1)MSMg01-308P03.TJ (MSMg01no308_p03.g1)
ACCAG432879AG432880
length730733
length of high quality
(start - end)
59 (154 - 212)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no308_p03.b1 PHD_FILE: MSMg01no308_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:24 2005CHROMAT_FILE: MSMg01no308_p03.g1 PHD_FILE: MSMg01no308_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATCCGCGGAATTCTGTCTTGTTACAGGCAGGATCTGTAACTTCCTGAG
GCTCAGAACTCTGAACAGGCCCCTGTTTCTCCCCTTTTTCATTTCTCAGC
CCTTCTTAGCTCTTCTACACTCTCTTGAATTTTCTATGGAGTTCCATATT
TTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTGGAAAAGTCACCAAGAGCTGATTTCTTTCACTTCCTTCCAAAAA
CCCTTACCAAATATGGACCAAGAGAGATTACTATCCTTACTCAAGGTGTC
TTTGTCACTGAGCAACCATTTTTTTTTTCCCCCCCCCCCCCCCGGATTTG
TTATGACAATATATATTAGTTGTCCCCCCCCAACAAAAAAAAAATGCTTT
TAGACGGTCCAGATCTGCCTCCTCAACATTTACCACTCCTACGCCCTTGT
CGAATCCCCTGAAGTGTCTCCTTTTCCCATATTTTCGCCTACCGGTTTCT
ATGTATTTCATAGACAACCCCTTTTCATTTCCTCGCACGTTGAGACGTTC
TATATCCCCCCTGCCTTCATATCGATTTACTAACTCCCAGTCTTCTTTTA
TACGTCTCCCCACCGTAATCCACGCCAGCCTCTCCCTTCCTCCTTTATTA
TCCCCTCCCCTTTCCACTCCTTTATTTTTTCCTCTTCTACCGCCCCTCCC
TCTTCTTCCGGTCTCCCCCCTCTTTTCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGATAACCATGAAACCATGAAA
CAGAGCTGCCTGTCTGGAGCTAAGGATCCTTTTCTCAGACTGTTACTTTG
AGGAGGTCTGGGTTCCAAGAGAACCTGGTATTCTTGGTAATTCCTACTGT
TGACTACCCAGAGATTTTCTCGGCATTCTGCTTTTCTGCTACAAACTAGA
AAAACAAACAAACAAACAAACAAACAAACAAACAAACAGCGAGAATCTAA
TGATCCCAGGCTTAGGGAAATATCATATAGCTGCAGTGGAACTAAGTGTA
CCTGACCTCACTANCANATTTATCCCGCCCCCCAACCAGAGAAAGCTCCT
GTGTTATGGAGGAGAACACCCGCAAAAAAAAATAACAGATGTCTGACCTC
TTCTAGTAACTTCTCAACACACTGAGTATCTGTCGAAGCCCTGGAAAGGA
TACATTTCACTGTGAAAGCTAAAGCTAAACCCTGGGCGGAGAGCAACACG
GGTTATCTCTTTACCCCCAAAGGCATTGACAATGTCTGTATTGACCGTAG
GACCCCAAAGGCTTCTACAGGTCTTCCTAAACACAATGCGCCTCTAGGTC
TATGTAGCAGGCGTTTTATCATAAAATCTAACCAAACAGCAGCAGTACAT
TAGAAATTTGTAATGTTGACTTTGGCCTTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_p03.g1 MSMg01no308_p03.g1 CHROMAT_FILE:
MSMg01no308_p03.g1 PHD_FILE: MSMg01no308_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:24 2005
         (285 letters)



>mm_chr1_173458014_173458698
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgataaccatgaaaccatgaaacagagctgcctgtctggagctaaggatccttttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgataaccatgaaaccatgaaacagagctgcctgtctggagctaaggatccttttctc 260

                                                                       
Query: 61  agactgttactttgaggaggtctgggttccaagagaacctggtattcttggtaattccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactgttactttgaggaggtctgggttccaagagaacctggtattcttggtaattccta 320

                                                                       
Query: 121 ctgttgactacccagagattttctcggcattctgcttttctgctacaaactagaaaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttgactacccagagattttctcggcattctgcttttctgctacaaactagaaaaaca 380

                                                                       
Query: 181 aacaaacaaacaaacaaacaaacaaacaaacagcgagaatctaatgatcccaggcttagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaacaaacaaacaaacaaacaaacaaacagcgagaatctaatgatcccaggcttagg 440

                                                        
Query: 241 gaaatatcatatagctgcagtggaactaagtgtacctgacctcac 285
           ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatatcagatagctgcagtggaactaagtgtacctgacctcac 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)