Query= MSMg01no309_a11.b1 MSMg01no309_a11.b1 CHROMAT_FILE:
MSMg01no309_a11.b1 PHD_FILE: MSMg01no309_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:30 2005
(315 letters)
>mm_chr1_62573595_62574310
Length = 716
Score = 580 bits (300), Expect = e-170
Identities = 309/312 (99%), Gaps = 1/312 (0%)
Strand = Plus / Plus
Query: 5 gaattctataaaattaagccctcttaaaatcaagtatttattattaagtgtctttagtat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataaaattaagccctcttaaaatcaagtatttattattaagtgtctttagtat 264
Query: 65 tatgggtacactatttaaatgtattttcatcatagaatattaaatctatacagtacttgt 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgggcacactatttaaatgtattttcatcatagaatattaaatctatacagtacttgt 324
Query: 125 ataaatgctgtgaggcctaaagggtgtataaatctaaatgttttttgtattaatgatcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaatgctgtgaggcctaaagggtgtataaatctaaatgttttttgtattaatgatcct 384
Query: 185 caatacatacataagaatctctcaaaatttttattgggcaggaatttttctccaacaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatacatacataagaatctctcaaaatttttattgggcaggaatttttctccaacaaaa 444
Query: 245 cataataattatgttgatgataatctctcttaatatggatttttttt-cagaatcttttg 303
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 445 cataataattatgttgatgataatctctcttaagatggatttttttttcagaatcttttg 504
Query: 304 tggattttcaag 315
||||||||||||
Sbjct: 505 tggattttcaag 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space: 216342
Effective search space used: 216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_a11.g1 MSMg01no309_a11.g1 CHROMAT_FILE:
MSMg01no309_a11.g1 PHD_FILE: MSMg01no309_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:30 2005
(546 letters)
>mm_chr1_62743826_62744767
Length = 942
Score = 1029 bits (532), Expect = 0.0
Identities = 541/546 (99%), Gaps = 4/546 (0%)
Strand = Plus / Minus
Query: 1 ttctcattctcttattaaatttataggctagttttctctgggagtttgaaccccagcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttctcattctcttattaaatttataggctagttttctctgggagtttgaaccccagcatc 683
Query: 61 tctgagagtactttgccagaaagtacacaccctaagcccccctcccccgccaccccctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctgagagtactttgccagaaagtacacaccctaagcccccctcccccgccaccccctag 623
Query: 121 aattgtaagggagttctttgtcattgttgtttggtattactgctttcaaatttgtaacct 180
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aattgta----agttctttgtcattgttgtttggtattactgctttcaaatttgtaacct 567
Query: 181 gtgacttatggtgccttaattaggcatctacatgtcaggtgattgttacattacggtggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtgacttatggtgccttaattaggcatctacatgtcaggtgattgttacattacggtggc 507
Query: 241 aagagctgctaatttgagcatgaaagtcgtgatggaaaggcaggagtcagggagttgacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagagctgctaatttgagcatgaaagtcgtgatggaaaggcaggagtcagggagttgacc 447
Query: 301 ttttctgtagagggtcctccagggtgggttaatccacacccaccaaagtcattagttctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttttctgtagagggtcctccagggtgggttaatccacacccaccaaagtcattagttctc 387
Query: 361 actctcctccttcatatttactcctacacagtttactgagctgccaatcaacccttagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actctcctccttcatatttactcctacacagtttactgagctgccaatcaacccttagta 327
Query: 421 tcagatgagcgcactgacagggagggagggggtttggagcaggctggctttctgcaggac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcagatgagcgcactgacagggagggagggggtttggagcaggctggctttctgcaggac 267
Query: 481 tccagaacacatttacagaggagacttcttttttcagtgtctgtactataccgtgatttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 266 tccagaacacatttacagaggagacttcttttttcagtgtctgtactataccgtgatctg 207
Query: 541 attcct 546
||||||
Sbjct: 206 attcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 942
Length adjustment: 10
Effective length of query: 536
Effective length of database: 932
Effective search space: 499552
Effective search space used: 499552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
