Query= MSMg01no309_i04.b1 MSMg01no309_i04.b1 CHROMAT_FILE:
MSMg01no309_i04.b1 PHD_FILE: MSMg01no309_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:07 2005
(658 letters)
>mm_chr1_28099836_28100893
Length = 1058
Score = 1137 bits (588), Expect = 0.0
Identities = 639/658 (97%), Gaps = 4/658 (0%)
Strand = Plus / Plus
Query: 5 gaattcataaattcatggcctcctttttgataacccttcaagtccaaagaagctcagaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataaattcatggcctcctttttgataacccttcaagtccaaagaagctcagaaa 264
Query: 65 ttgcttttaatattaactgagtaaaaaactagatatttataaaagagatatagctttagc 124
||| |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct: 265 ttgtttttaatattaactgagtcaaaaactaggtatttatcaaagagatatagctttagc 324
Query: 125 tagcattaattttaaaaataattaaattgtattgagctagagatagggcttagaagttaa 184
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 325 tagcattaattttaaaaataattaaattgtattgggctagagatagggcttagaggttaa 384
Query: 185 gagttttcattccagagagccaaataccatttcctagtaacaatattgagactcacaaaa 244
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 gacttttcattccagagagccaaattccatttcctagtaacaatattgagactcacaaac 444
Query: 245 acctgttactctggttttagtagagttgatgtgtttttcttacctctgtagatatcatgt 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 acctgttactctggttttagtagagttgatgtgtttttcttacctctgtagatatcattt 504
Query: 305 atgtacatgctacaaatacacatgcaggcaaatactcatgcataaaaataaactgaataa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtacatgctacaaatacacatgcaggcaaatactcatgcataaaaataaactgaataa 564
Query: 365 aaagatgaaaacattctatgaacctctaaagtgaaaaataaagtaaaagtattgcataca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagatgaaaacattctatgaacctctaaagtgaaaaataaagtaaaagtattgcataca 624
Query: 425 ttggtttatctttggcagtcttttttttttt----atgtgtgtgtggttattttatttat 480
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 ttggtttatctttggcagtctttttttttttttaaatgtgtgtgtggttattttatttat 684
Query: 481 ttacatttcaaatgttatccccttccagatttcccctcctcaaacctcccttttcatccc 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 685 ttacatttcaaatgttatccccttccaggtttcccctcctcaaacctcccttttcatccc 744
Query: 541 catcccctttgcctctcagatggtgatcctccacccacccacccactcctacctcacccc 600
| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 745 cctcccctttgcctctcagatggtgctcctccacccacccacacactcctacctcacccc 804
Query: 601 tttagcatctccctacactgaagcatcaagtgtccatatgaccaagggcctcccctcc 658
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 805 tttagcatctccctacactgaggcatcaagtgtccatatgaccaagggcctcccctcc 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_i04.g1 MSMg01no309_i04.g1 CHROMAT_FILE:
MSMg01no309_i04.g1 PHD_FILE: MSMg01no309_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:07 2005
(662 letters)
>mm_chr1_28144568_28145623
Length = 1056
Score = 986 bits (510), Expect = 0.0
Identities = 616/656 (93%), Gaps = 12/656 (1%)
Strand = Plus / Minus
Query: 10 aagccccttaccccataaaaacccctagctttcgagccttgtggacgacatccattatct 69
||||||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||||||
Sbjct: 1056 aagccccttaccccataaaaaccactagcttttgagccttgtggccgatatctgttatct 997
Query: 70 cctgtgtgggatgcatgttggacccgagctccgtcattaaactacct-catttaattaca 128
|||||||||||||||| || || ||||||| |||||||||||||| || ||||||| |
Sbjct: 996 actgtgtgggatgcatgacggtccggagctccttcattaaactacctcca-ttaattaaa 938
Query: 129 tcagggcggtctattcatgattctttgggtgcaca--ccgaattgggaattgagtggggg 186
|||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct: 937 tcagggcggtctattcatgattctttgggt--acatgccgaatcgggaattgagtggggg 880
Query: 187 gttcccactaggttctatcaatagcagttcaggagggaaaactataataacatattgtat 246
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 879 tttcccactaggttctatcaatggcagttcaggagggaaaactgtaataacatattgtat 820
Query: 247 taaaaagtattttcaatgaaaaagaaaaaataaagaatgactttcacagataaattgggt 306
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 819 taaaaagtattttcaaggaaaaagaaaaaataaaggatgactttcacagataaatggggt 760
Query: 307 gagtttggggaaggactttcattacagaataaagtttgaaagcaatcaaccagtcaggat 366
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 759 gagtttggggaaggactttcattacagaacaaagtttgaaagcaatcaaccagtaaggat 700
Query: 367 cccgtaaattattggggtccaatgaagggctgtcagtgagtctttttgtctggggattaa 426
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cctgtaaattattggggttcaatgaagggctgtcagtgagtctttttgtctggggattaa 640
Query: 427 taaggcacagtcacagtcactctaggtcagttaagctggctgaactacctacacccacaa 486
||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 639 taagg------cacagtcactctagttcagttaagctggttgaactacctacacccacaa 586
Query: 487 ggtactcacatatgtctccatcccagtttaaattgaatcttcaaaagccaagaaaatacc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggtactcacatatgtctccatcccagtttaaattgaatcttcaaaagccaagaaaatacc 526
Query: 547 agatccagcctggctttgagttagctgtgttcactgggctgctttgtaaatggagaatca 606
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 525 agatccagcctggctttgagttagctgtgttcactgggctgctttgtaagtggagaatca 466
Query: 607 gcaatagtggctggtgtgaggtcccaaccgtccactgtctgaagacttggcttttc 662
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 465 gcaatagtggctggtgtgaggtcccaaccgtccactgtctgaagccttggcttttc 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1056
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1046
Effective search space: 681992
Effective search space used: 681992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
