Query= MSMg01no309_k06.b1 MSMg01no309_k06.b1 CHROMAT_FILE:
MSMg01no309_k06.b1 PHD_FILE: MSMg01no309_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:17 2005
(316 letters)
>mm_chr1_93721345_93722060
Length = 716
Score = 572 bits (296), Expect = e-168
Identities = 308/312 (98%)
Strand = Plus / Minus
Query: 5 gaattcatcgcacgctctttagcacattttgccaaagtgtgttacaaactttgtaaatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcatcgcacgctctttagcacattttgccaaagtgtgttacaaactttgtaaatat 457
Query: 65 atcaatgttaaactacctttttgtcccatacagaaaccctcttatttccccgatgatgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 456 atcaatgttaaactacctttttgtcccatacagaaaccctcttatttccccgacgatgat 397
Query: 125 atattctttagaaagattagtacatttctttttcttgcaaatgacctagaatttaaactt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 396 atattctttagaaagattagtacatttctttttcttgcaaatgacctagaattttaactt 337
Query: 185 ctgaagaagttgatttctcttgcttctgtcaggtcccttgctggcctcgggagaagccaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctgaagaagttgatttctcttgcttctgtcaggtcccttgctggcctcgggagaagccaa 277
Query: 245 agtgaatgctcttgtgggcccacaggcttctctttctcctgatgtagcttctgctatgtt 304
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 276 agtgaaggctcttgtgggcccacaggcttctctttcttctgatgtagcttctgctatgtt 217
Query: 305 gacacatcatag 316
||||||||||||
Sbjct: 216 gacacatcatag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_k06.g1 MSMg01no309_k06.g1 CHROMAT_FILE:
MSMg01no309_k06.g1 PHD_FILE: MSMg01no309_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:17 2005
(293 letters)
>mm_chr1_93557925_93558617
Length = 693
Score = 501 bits (259), Expect = e-146
Identities = 287/305 (94%), Gaps = 15/305 (4%)
Strand = Plus / Plus
Query: 1 acctcaaatccttcgccttcaattcctacgcaatactgaggtccactggggcccgg---- 56
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 192 acctcaaatccttcgccttcaattcctacgcaatactgaggtccactgggg---ggtggg 248
Query: 57 --------atcaaacgggcatgttgaagatatcaaccagtaggagacgactttggggaag 108
|||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 249 gtgggggaatcaaatgggcatgttgaagatatcagccagtaggagacgactttggggaag 308
Query: 109 tttttaagtaaatgccttcagatggtcatgagatgatgcagatgctcagactttccatgg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttttaagtaaatgccttcagatggtcatgagatgatgcagatgctcagactttccatgg 368
Query: 169 ctgcggccttgaccactgctgtctgcacacatgtgataaagactttgttttgtcttgctt 228
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 369 ctgcggccttgaccactgctgtctgcacacatgtgataaagagtttgttttgtcttgctt 428
Query: 229 gtttattctacagagctgggatttgcaaatgtggctatgcctctagaaaaaggggattta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtttattctacagagctgggatttgcaaatgtggctatgcctctagaaaaaggggattta 488
Query: 289 agaga 293
|||||
Sbjct: 489 agaga 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
