BAC Information

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BAC

Clone NameMSMg01-309K22
Chromosome1 (Build37)
Map Location 155,443,897 - 155,444,133
singlet/doubletsinglet
Overlap genenone
Upstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl
Downstream geneLOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309K22.T7 (MSMg01no309_k22.b1)MSMg01-309K22.TJ (MSMg01no309_k22.g1)
ACCAG433397AG433398
length750742
length of high quality
(start - end)
322 (45 - 366)240 (132 - 371)
definitionCHROMAT_FILE: MSMg01no309_k22.b1 PHD_FILE: MSMg01no309_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:20 2005CHROMAT_FILE: MSMg01no309_k22.g1 PHD_FILE: MSMg01no309_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTAATCCTAACAGGAGGCAAAGACAGGTGGGATTCTAGAAGTTT
GAGACCGGTTTGGTCTATATAGTAAGCTCCAGGCCCCCCAGGGCTACATA
GTGAGACCCTGTCTCAAATAAGTAAATCTAAAAATTAAAACTAATAAACA
AAACCCCGAATTCTAGAAGCTGGGTACAGTGATAAACATGGGTGGTCTGA
ACATTGGAGAGGTAGAGGCAGGAGGATCCGAAGTCTTAAGGTTCATCAGC
TGTGTAGGAGGCTGAAGGCCAGCCTCATCTAATGACACCCTGTCTCAAAA
AGGAAACACAGTCCATATTGTTTATTCTACCCACCCCCCGCGTGTGTTTG
GCCGACTGTCTTAGTGTCCTGCCCACCGCGCTGATGAAACAATGAAAGCA
GAAGCGGCTTAGAGGAGGAAGGGTTTATTTGACTGACACATCTTGTCATG
GAAGTGAAGACTGGACAGAAACCTGCAGACAGACACTGTGGAGGAGCGCT
GCTTGTGGGCTCCTGAAGGCTCCGAGTAACTAGCTTTCTTATGTAGTCCA
CAGTGAGCTAGGCCCTCACAGTAGTTAACAATTGAGCAGATTCCCCACTA
ACTGCCCATAGGCCTGTCTGATCTGGGCAATCAATTCTGATATTCCTTCC
TTCAGACACTTTATGCTGCGTCCAGCTGATATTTATTTACCCATCAGAGC

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGAAAGAACCAGGCAATGGGAGA
TTAGCCAGCCAGACATGGAGGAAGTCCGCATGTATGGGGATTGAATAAGA
GCTAACTGGCCACATGGCAAACATGGACTAGGATAAATGAGTTGTTAAGT
TATACAAGCTAGCAGGAACAAGCCTAAGCTATAAGGCCTCAACATTCATA
AATGTAAGTCTCTGTGTCATTATTCAGAAGCTGAATAACAACTTCCCCTC
CCATTATCTACCAGGCACTTTTCTAGGCTGTACAGTCTAAAGTCCCTATC
CCAGAGTCCATTGCAGGATTTCTTTTTGTAGCCACCCCCCCTATCCCTAC
TGCATTCAGATCTTTACTTTAAAGCCCCCCACTAAGTGTGAGAAATGATG
GATGTGACCATTAACTTAACCTGATTATTAGACCTTGTATGCATGTGGTC
TTCTTGAACTATCTGTTGATTAACCCATTTAAGAGACAGAAATAGCCTCA
CAAAAACATAGCAAAAATCACTCATAGTGTGCTTTTGTTTGTCTGTGGCT
TTTGACAGGTTTTGTTTTGTTTGTCTCTATCCNCAGAGAAAGGAAGAATT
GACAGAACATATAAAACCAAACATTGGTATCTTAATGATTATTGCCTGTT
AGAGACATCATGATCATGGCCTCTCTTTATAATGGAACCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_k22.g1 MSMg01no309_k22.g1 CHROMAT_FILE:
MSMg01no309_k22.g1 PHD_FILE: MSMg01no309_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:20 2005
         (240 letters)



>mm_chr1_155443697_155444336
          Length = 640

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatggggattgaataagagctaactggccacatggcaaacatggactaggataaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtatggggattgaataagagctaactggccacatggcaaacatggactaggataaatgag 378

                                                                       
Query: 61  ttgttaagttatacaagctagcaggaacaagcctaagctataaggcctcaacattcataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgttaagttatacaagctagcaggaacaagcctaagctataaggcctcaacattcataa 318

                                                                       
Query: 121 atgtaagtctctgtgtcattattcagaagctgaataacaacttcccctcccattatctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atgtaagtctctgtgtcattattcagaagctgaataacaacttcccctcccattatctac 258

                                                                    
Query: 181 caggcacttttctaggctgtacagtctaaagtccctatcccagagtccattgcagga 237
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 257 caggcacttttctaggctggacagtctaaagtccctatcccagagtccattgcagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)