BAC Information

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BAC

Clone NameMSMg01-311A07
Chromosome1 (Build37)
Map Location 114,295,977 - 114,296,186
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311A07.T7 (MSMg01no311_a07.b1)MSMg01-311A07.TJ (MSMg01no311_a07.g1)
ACCAG433640AG433641
length763741
length of high quality
(start - end)
266 (36 - 301)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no311_a07.b1 PHD_FILE: MSMg01no311_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:45 2005CHROMAT_FILE: MSMg01no311_a07.g1 PHD_FILE: MSMg01no311_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCAGAGGATCCGC
GGAATTCCAGAAGACTGTCTTAAAAACAAAACAAAACAAAACAAAACAAA
ACAAAACAAAACAAAACAAAACAAAACAAACCAAAGTTAGGTGATGTTAT
ATGGTGATGAGTATATTAGCTTATTTAAGATTTAATGTGTAAGTGATTAA
AGATCAAGTGTTATACAATTAAAATTTCATGAAAAAATGTCCAATACATG
ATCTTAACATCCTTTTGTACTTAGAGACAATTTAAATTTTTTTCTTACAG
GAAAAACAGAGGCTCTTACAAGTAACCTTGTTTTATGAAGCTCACCCTTT
TCATCCTAGTGACAACACCTTTTTTTTTCCCCCCCCCCCCCGGATTAAAA
TCCTGATAGGAAATTCAGGNCCCCAACATTCTCCCACAAAACAAATATGT
ATGTTCTCGGCATGCCGCTGCTCCTGTCGTTGCCCTACAAATCCCTTTTA
TTTTCATTAATCGCCTGTTCCATTCTCCCCACTTCCCACTCTCTTTCATT
CCCCCCCATTTTCCCCCCTTTCCCTCAACCTTACCCTCTTTCCTTCCCTT
TCCCCCATTCCCTTTTCTCTATTTCCTCCTCCCACCCCTTCTTCTCATCC
CCTCCCCCACTACCCCACCTATCCCCCTTCTCTCTCTCCTTTTTCCCCTA
CATCCCCCCTTCTCTCCCCTTTATCCCCCTCCCTTCTCCCCCTTCCCCAC
TTTCCCCTCCTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACTGGGGAAAAACCCTACAAAT
GTGAAGAGTGTGGCCAGGCATTTATCTGTTCTTCATACCTGAGGAAGCAT
CAGAGGATCCATACTGGTGAGAAACCATACACATGTGAAGAATGTGGCAA
AGCTTTTAGCATTTATTCAACCTATGCTCAACACCAGAGAATTCATACGG
GAGAAAAACCTTATAAATGCAAGGAATGTGATAAAGCATTTAATAATCAC
TCAGCCCTAATTAAACATCAAAGAATTCATACTGGAGAGAAACCCTATGC
ATGCAAAGAATGTAGTAAAGCTTTTAATAATAGCTCAAGCCTTATTCGAC
ATCAGCGAATTCACATTGGAATCGCCCCCCTAGAAATTCAAGGAATTTGG
CAGGGCCTTTAGTAATAGTTCAGTGCTTAGCTCCAAAATTTCATGATAAT
GAAAAGCTGTAGAAATGAGAAAGGTGACTAATTAATAAGTATTCTATACA
TATACAGTGTAAAAAATCATGCATGAAAGAAAGCCTACAAGTTCAAATAG
TGTTGCAACTTTCTCAACTCTTCTTCATGTCTTACTGATAGCAGAGAAAA
TATACTGAGGAAGCCTACATGTGTCAATGATGTGTCAAGGCTTTTACTGA
CTGTTTACTCCTCATCAGTGAACTCATGCTTCATAGAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_a07.b1 MSMg01no311_a07.b1 CHROMAT_FILE:
MSMg01no311_a07.b1 PHD_FILE: MSMg01no311_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:45 2005
         (266 letters)



>mm_chr1_114295676_114296343
          Length = 668

 Score =  180 bits (93), Expect = 8e-50
 Identities = 182/215 (84%), Gaps = 16/215 (7%)
 Strand = Plus / Minus

                                                                       
Query: 63  aaaacaaaacaaaaca---aaacaaaacaaaa-caaaccaaa---gttaggtgatgttat 115
           ||||| |||| |||||   |||| |||||||| ||| |||||    |||| |||| ||||
Sbjct: 511 aaaac-aaac-aaacaagcaaac-aaacaaaaccaacccaaaatcattagctgatattat 455

                                                                       
Query: 116 atggtgatgagtatattagcttatttaagatttaatgtgtaagtgattaaagatcaag-t 174
           |||||||||||||||||||||||||||||||||||||  |||||||||||||| || | |
Sbjct: 454 atggtgatgagtatattagcttatttaagatttaatgcctaagtgattaaagaaca-gat 396

                                                                       
Query: 175 gttatacaattaaaatttcatgaaaaaatgtccaatacatgatcttaacatccttttgta 234
           |||||| |||||||||| ||||||||||| |||| |||||| |||||||| | |||| ||
Sbjct: 395 gttatataattaaaattccatgaaaaaatttccattacatgttcttaacaactttttata 336

                                              
Query: 235 cttagagaca--atttaaattt-ttttcttacagg 266
           |||||||| |  |||||| ||| |||||| |||||
Sbjct: 335 cttagagaaacgatttaa-tttcttttctcacagg 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 668
Length adjustment: 9
Effective length of query: 257
Effective length of database: 659
Effective search space:   169363
Effective search space used:   169363
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)