BAC Information

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BAC

Clone NameMSMg01-311E10
Chromosome1 (Build37)
Map Location 150,752,746 - 150,753,036
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647, LOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311E10.T7 (MSMg01no311_e10.b1)MSMg01-311E10.TJ (MSMg01no311_e10.g1)
ACCAG433826AG433827
length734747
length of high quality
(start - end)
292 (126 - 417)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no311_e10.b1 PHD_FILE: MSMg01no311_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:04 2005CHROMAT_FILE: MSMg01no311_e10.g1 PHD_FILE: MSMg01no311_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGATGGTTGCCTTGATTCTCTGTGTGAAATTATTCTTGCATGGCA
TTTGTAATTGTTTCTGTCAGGACCATGGAAACCTTGCAGATATTTACTAA
TGTGCCTTGGAGAGCATGGAACCTTGGAGATTTGTGTAATATACCTTTGG
AAATGGAAATTCTACAGATAGTTCATAAGCTAACTCGTCAGCTCATGATA
GTGAAAATCATCCTGAGGCAGTATTTGTCCTTGGGAAAACCTGCATTGTT
ACTCTTCAGCTAATATACCACAGATTAAACTGGATAGTTGAAGAAAACCT
GACATGTATATTATAAGACTGCACATGGATCATAAAACTATGACTTTTTA
TGCTTGTAACTGTCCTCCCCCCCACTGTAGCTACAGTCACAATGCAGGAA
CATGAGAAATGACTCATTATATCTTTCTCTATGAGCAGCATTGCAATTAT
AACATAAGACAATGAAGCTATGTTATTTGAAGGAATTGGCTTTAGCAGTG
TAAGACAACCCTATAGAGGCACTTTCTAAGCTGCCTTTTTTATATGATAT
GTGCCTGTTGGTTCTGTACTTAACAGATTTTACTTTTAGTATAATTCATT
CCAAATGAAACTATTAAAAAAAATAAAGAGCAAGCAATGTTTCCCACACT
TGAACTTCAATAAAAGTTGTCAGTACGAAAAAGT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGTGCTGTGACTGAACTCAATTGAA
CTGTGCCCATTAAATTATTATCTCTCTATAGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATGTCTGCACTGTTCTCTTAATTCACCTCTCTT
TCCTGTGCCAGTCTCTTAAATAGCCTCTCATTTCTATGAAGTCCTCTTGA
GAGTGACCATGTCAAATCTTTCTCTGATTCATCACTTTGTGTGCCTATCA
ATTAGACTTCACTTTCAAACACTGTTGTTTCTGTAACTAAAGGTGGGCAC
TAAAGCAGCTTTTGTANNCTCCCCCGCCACACCGACCTAGAAGGTCTTTG
TTGCTGATCCCTTGCCCCCCCACCAAAAAATAAAGATTGAGTGGGGGGGG
GGTATATTTGCATAGATATATAAGTACACATTTACAAATTCAAAATAAAA
TTATTGAACATTTGAGATCCTTCTCATTTGAAATAATAAATAAATAATTG
TTATACTATCTTAGAATATTAATAATAATTTTCTATTATATAGCACTATA
TTATTAAATGAATATAGAATATTTCTATAATTATTCAACTACATTATTAT
TGGGGAATAATTTTACGAAAAGAACACTCTTTTGCTTATTCCCACTATTA
TAGCTTTTCGGGCTTAACAAAGTTTATTGAAAAGCTCTTCAAACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_e10.b1 MSMg01no311_e10.b1 CHROMAT_FILE:
MSMg01no311_e10.b1 PHD_FILE: MSMg01no311_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:04 2005
         (292 letters)



>mm_chr1_150752546_150753237
          Length = 692

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaaaccttgcagatatttactaatgtgccttggagagcatggaaccttggagatttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tggaaaccttgcagatatttactaatgtgccttggagagcatggaaccttggagatttgt 432

                                                                       
Query: 61  gtaatatacctttggaaatggaaattctacagatagttcataagctaactcgtcagctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtaatatacctttggaaatggaaattctacagatagttcataagctaactcgtcagctca 372

                                                                       
Query: 121 tgatagtgaaaatcatcctgaggcagtatttgtccttgggaaaacctgcattgttactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgatagtgaaaatcatcctgaggcagtatttgtccttgggaaaacctgcattgttactct 312

                                                                       
Query: 181 tcagctaatataccacagattaaactggatagttgaagaaaacctgacatgtatattata 240
           |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |
Sbjct: 311 tcagctaatataccacagaagaaactggatagttgaagaaaacctgacatgtatattaga 252

                                                              
Query: 241 agactgcacatggatcataaaactatgactttttatgcttgtaactgtcct 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agactgcacatggatcataaaactatgactttttatgcttgtaactgtcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)