BAC Information

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BAC

Clone NameMSMg01-311E12
Chromosome1 (Build37)
Map Location 103,687,630 - 103,687,912
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311E12.T7 (MSMg01no311_e12.b1)MSMg01-311E12.TJ (MSMg01no311_e12.g1)
ACCAG433829AG433830
length716734
length of high quality
(start - end)
371 (45 - 415)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no311_e12.b1 PHD_FILE: MSMg01no311_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:05 2005CHROMAT_FILE: MSMg01no311_e12.g1 PHD_FILE: MSMg01no311_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACCAGTTACTTCCATGTTAAAACTGTAAAACAGAACCAGACATCT
TCAGCTGGGTTTTATCATTCTCACCTTCTTGACCTTAAGTAAACAACTTC
CTCCATTGGTGCCCTGTTTCCTCTTCTGTAGACTGGATGTCAGCATGTAC
TTTACTATAGTTACTTTGAAGACTGATGAGCTAGAAGAGCTACACCTAAA
ATTAAGTGGCTTAGGTTTCTTCTAAGTGTCACAAGCATGATAGCTCATCA
CTGTCATTTTGTTGTTGTTGTTGTTGTTTGTAGTTGTTGCTGTCAAATAC
AGAAGCAGTCAGTTCTTATTCCATGGTAGAAATTGTTGACAGAGGATTTA
AATAAGCTTGTCCCCCCCACCCCATGTGAAGTATTCTTAATTTTTTTATC
AAATACATTTTGTACAAGTAGAGATATTAACTGTCATTTCAATATTCATC
TAAGTTTTAAAAAGATGCTCAAGTCTCCATCTTGCCATTCAAACCAACTT
TAGCCTGAGTTCTACGTCTTTATATAAGTCATGCATTATTCAGGAAATGA
TGAGACATCCAAGGGAAACTTTTGATATCACAAAATCCCTTTGCAATTAT
CTCTAGATTGTCCCCAGCTATTAACTTTCCTTTGACCCTTTTCCTAAGAG
GAATATTCTCCTATTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTATTTAATATAATTTTAGTGAA
AACAGAAAGTCAGAACACAAAATGAGTAATATCTTGACCTTGTATAATTA
TCCTGGAATTTAGTCTTCTTTGTGGATTGCTACAAGGTTTTCCTAAACAT
GTTTATTCATGAACTCCATATAATATTAACTCTTTCTAATATACTATAGA
TTTTTAGCTATCTGATTTTGCTGTCTGCATGCTTTTATGTGAAAATAATC
CATGTCTGGTGCTCACAGAGCTCCTAAGGAGAAATCATGCACCCTGAAAC
CAGAGCTGATATTATTTTTCATCCCCCCCCCGCCTTGAATTAAAACTGCT
TTATCAACAAAAGCAGACAACCCCACACAACAACAAAAACAACTCTCGAA
CGCTTAAGTTTTCTTCATCCATATTTTTTTGTTTTCTTGTTTATCATGTG
CATGTGTGTGTGTGTGTTTGTGTGCATGTGTGTGTGTGCATGTGCGTTTG
TGTGTGTGTGTTTCTAATTACCTATTATTTTCTCTTCTTCTTACTTTTCT
TCTATATTAACATAACTTCTCTTTATAGCCCTTTATTTCATACCCTTCCA
TTTCCATTTTCTCTCCACCTTTCTTTTTTACTTCCTATTCCCCTTTCTCC
TTCATTATTTCCTTTATTTTTTAAACACACTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_e12.g1 MSMg01no311_e12.g1 CHROMAT_FILE:
MSMg01no311_e12.g1 PHD_FILE: MSMg01no311_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:05 2005
         (284 letters)



>mm_chr1_103687430_103688113
          Length = 684

 Score =  485 bits (251), Expect = e-142
 Identities = 275/283 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatttaatataattttagtgaaaacagaaagtcagaacacaaaatgagtaatatcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatttaatataattttagtgaaaacagaaagtcagaacacaaaatgagtaatatcttg 260

                                                                       
Query: 61  accttgtataattatcctggaatttagtcttctttgtggattgctacaaggttttcctaa 120
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 acctcgtataattatcctggaatttagtcttctttgtagattgctacaaggttttcctaa 320

                                                                       
Query: 121 acatgtttattcatgaactccatataatattaactctttctaatatactatagattttta 180
           |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 321 acatgtttatgcatgaactccatattatactaactctttctaatatactatagattttta 380

                                                                       
Query: 181 gctatctgattttgctgtctgcatgcttttatgtgaaaataatccatgtctggtgctcac 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctatctgattttgctgtctgcgtgcttttatgtgaaaataatccatgtctggtgctcac 440

                                                      
Query: 241 agagctcctaaggagaaatcatgcaccctgaaaccagagctga 283
           |||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 441 agagctccaaaggagaaatcatgtaccctgaaaccagagctga 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)