BAC Information

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BAC

Clone NameMSMg01-311E22
Chromosome1 (Build37)
Map Location 177,835,210 - 177,835,500
singlet/doubletsinglet
Overlap geneExo1
Upstream geneGrem2, Rgs7, Fh1, Kmo, Opn3, Chml, Wdr64
Downstream geneGm104, Pld5, B020018G12Rik, Cep170, Sdccag8, LOC666235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311E22.T7 (MSMg01no311_e22.b1)MSMg01-311E22.TJ (MSMg01no311_e22.g1)
ACCAG433848AG433849
length749733
length of high quality
(start - end)
346 (76 - 421)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no311_e22.b1 PHD_FILE: MSMg01no311_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:07 2005CHROMAT_FILE: MSMg01no311_e22.g1 PHD_FILE: MSMg01no311_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGA
ATTCTCTGTTCATGTATCCTTAAGACATTTTTAAAATTGGGCATTTGTTT
ATTTGATTCTTTGTTTTTTGATTTCTCCGCATATTCTGAATATTAACTCT
CCATTAGATATATGGCTGACAAAAATTCTCTCCCGTTTGTGGATTTCTTC
ACTCAACTGACTATTTCCTTTGGAGTACAGCTTTCTGGTTTTATGAAGTT
CCTGTTTCTCAATTGTTGGCCACGATTCCTGAGCAAATGGAATTCTATTA
ATACAACCCCTCCTCCTGCTCTTGGATTCTGTAGGTGCTGCCTGTGTTTT
CTTCTAGCAGTTTCAGTGTTTTAGGATTCATATTTATATATTTGATCCAT
TTGAAGTTAGCTTTCTTTTTCCCCCCCCCACAAAAAAAAGATTTCATTCT
TCTGGTTGGCGACATCCTCTTTTCCCAGAACAGCTTTTTGACAATGCTTT
CTCCCAGCATGCATCATTGACATCTTTGTAAAACATCATAAGGTGATATT
TACAAGATCTCATGCTTGAATCCTTCACTGTATTCCCTTATTCTACCTGC
TCTACTTTGCTGCCTGAATCATTGCTGTTCGTATCCTCCAATAGTTCCGC
ACCACATTCTTGCATTCCCGTTATTTCTTTAACATTCTGCAATTGTTTTT
TTCCCATTACCAAACCGCCTTTGTCCGAATCCCACAAATCTTAGTTCTG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCACTTCCTGCCTCTGCCTCC
CATGTGCTGGAATTAAAGGCATGTGCCGGCACACTTGGGCCTTTAAGGCT
GATTTTTGTTCTGTGCATAGTAACACTGTTTCCCAGGCTAGAGAGGGAGG
TATGTGGATAGGTCTTTAAAAGTGATTAATCTGGCAGACTGAATAAAAAA
ATTGAAAAGTTAAACAGACAGAAGCCCACAGCTCTGCCTGGGTCCACGGT
GTTTAGGTTTTTGGAAATACCAAGCATTTTATTCTCACCTTAGGAACAGC
CAGTTCATGATTTCATTCGGATAAACTCCNANAACANNNACCGTTATTTT
GTTAGTTATAAATTGGATTATGCCCCCCCCCAACNNNAAACTAAATACTG
GGGGACGTCGGGGAAGTTCTTTAGGGAACAGAGAAAACAAATTCCAACTA
ATATGTCAAACATCCAGCTAAACACAAATGCTGTCTGAAGATGTTTAAAA
GCAGGCTTAAATAACAATCTGGGTGCTGGGGGTGCACGCCTTTAATTCTA
TACTCGCTTGGCAGTTGGATTTCTGAGTTTGAGGTCCGCCTGGTCTATAC
AGTGAGTTCCCGAACTATTGGTTCTTCACTGAAAACCCCTGCCCGACACC
TCTTCCTCCCTCTGCCCTCACATCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_e22.g1 MSMg01no311_e22.g1 CHROMAT_FILE:
MSMg01no311_e22.g1 PHD_FILE: MSMg01no311_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:07 2005
         (291 letters)



>mm_chr1_177834948_177835638
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagcacttcctgcctctgcctcccatgtgctggaattaaaggcatgtgccggcacactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agagcacttcctgcctctgcctcccatgtgctggaattaaaggcatgtgccggcacactt 494

                                                                       
Query: 61  gggcctttaaggctgatttttgttctgtgcatagtaacactgtttcccaggctagagagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 493 gggcctttaaggctgatttttgttctgtgcatagtaacactgtttcccaggctacagagg 434

                                                                       
Query: 121 gaggtatgtggataggtctttaaaagtgattaatctggcagactgaataaaaaaattgaa 180
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaggcatgtggacaggtctttaaaagtgattaatctggcagactgaataaaaaaattgaa 374

                                                                       
Query: 181 aagttaaacagacagaagcccacagctctgcctgggtccacggtgtttaggtttttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aagttaaacagacagaagcccacagctctgcctgggtccacggtgtttaggtttttggaa 314

                                                              
Query: 241 ataccaagcattttattctcaccttaggaacagccagttcatgatttcatt 291
           ||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ataccaagcaaattattctcaccttaggaacagccagttcatgatttcatt 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)