TCATXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAAAGAGGATCCGCGG
AATTCTTGATTTCAGAAATACAGGTCTTCAGACTTGCATGGAGAGATCTA
CCCACTGAGCAATCTTTCTACCCTTACTTCAGCTATTTTGACCACTGCTG
TACAACTTCACTTAAAGTGCTTTCTTTCTATATGTTTTCTATCCTTGAAG
TGAAGGAGATTAGAAACAGTTTTGATAGAATTGGTATAAATTTTGTCTCC
CTACAGACTGTGGGGGGGGATTTCTGGATTTCTAAGATGATTAGTTTTAA
CTGTCATTTTACATATTCTATAATCACTCAGAGAGTAGCTCTTCAATGAT
AGATACTCTATTATAATGTCCGCTGGCGCGCATGCCTTTAAGGAGTTTGT
TGACTGAGTTGTTCACACCCCCACTGAATGTGGACCGTACTATTCTATGG
ATGTTCGAGAATGNNNNCNCGATAAGGAGAGTGAGCTGAGAACCAGCATG
CAAGGAATAACCCCTTTCTGATTACNNNCGTCTGGGNATGCAATGGGACA
GCGGCCCCTCCCCCTTTTTGCTATTTTCCCCTTTCCCCCCCCGAACAAAT
TGGAACCAAAAACGCCCAGTGAAAAAAAAGANAACTTTTTCCCNNNCCTT
TTTTTTAACAAAACCCCCANAAAAAAAATACTCGTCTCTCCTACCTCCCN
NTCCCCCATNAAAATATAATAAATACAATTTAACCCNCNNNNTNNCTACC
GTCACAA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAGTACAACTTCTAAGTTTCTAG
AGTACCTAACCCACTGGACTCTCCCAGATGTCTTAGGTAAAGCTTTTTAG
AACAAACTTTGGCAGAGGAACTGAGGTGCCTCTAGTTTTCTGATGCTCTA
GGGAGAAAAGAGGGGCAGGGTAGGGATGCAATAGAGTAGAGATCTGATCC
TGCTGAGGCTAGCCTTGGTGTGGACCTCAAAACACTCTGGTACATGACTA
GAACCACAACATTAGTTCTATTTTGAAGCATCAAAGGGCTGAACTTCTGT
ATTCTTGTGATTGTAACTCATGAGCTGTGCACAGGGTACAAAAGGAGAGA
ATGTACAAGCATTCCAAGGAGACATAAGTATGAAGCTAGTTGTCCTCAGT
CTCATGGAGGCAGCTAGGAGCCAGTCATTGAAACCCACTGCTCACAGCAG
CTGAAGGCTGTGCACATTCAACATCATAAATGGAATCTGCATAAAGCCTG
AACAATGTCACCTGTAGCATTAGTGGTGTTACCTTCCTGACTTTTTCTTG
GCCCCCACCAACCCTTTGTGGCCTTCATCATGGCTCACAGAGGCCTTATT
TCATTAACTGAGAGGTGTGCTTCAGTAGGAGGCAGGGGAAAAAGGGCATA
AGTAGAGATTCAAGAATGTGGAGAAGAGC

Query= MSMg01no312_a15.b1 MSMg01no312_a15.b1 CHROMAT_FILE:
MSMg01no312_a15.b1 PHD_FILE: MSMg01no312_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:02 2005
         (283 letters)



>mm_chr1_126503804_126504486
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtcttcagacttgcatggagagatctacccactgagcaatctttctacccttacttcag 60
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 201 ggtcttcagacttgcatggagagatctacccactgagcaatctctctagccttacttcag 260

                                                                       
Query: 61  ctattttgaccactgctgtacaacttcacttaaagtgctttctttctatatgttttctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctattttgaccactgctgtacaacttcacttaaagtgctttctttctatatgttttctat 320

                                                                       
Query: 121 ccttgaagtgaaggagattagaaacagttttgatagaattggtataaattttgtctccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgaagtgaaggagattagaaacagttttgatagaattggtataaattttgtctccct 380

                                                                       
Query: 181 acagactgtggggggggatttctggatttctaagatgattagttttaactgtcattttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagactgtggggggggatttctggatttctaagatgattagttttaactgtcattttac 440

                                                      
Query: 241 atattctataatcactcagagagtagctcttcaatgatagata 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattctataatcactcagagagtagctcttcaatgatagata 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no312_a15.g1 MSMg01no312_a15.g1 CHROMAT_FILE:
MSMg01no312_a15.g1 PHD_FILE: MSMg01no312_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:02 2005
         (652 letters)



>mm_chr1_126649733_126650784
          Length = 1052

 Score =  683 bits (353), Expect = 0.0
 Identities = 362/365 (99%)
 Strand = Plus / Minus

                                                                        
Query: 288  gtaactcatgagctgtgcacagggtacaaaaggagagaatgtacaagcattccaaggaga 347
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1049 gtaactcatgagctgtgcacagggtacaaaaggagagaatgtacaagcattctaaggaga 990

                                                                        
Query: 348  cataagtatgaagctagttgtcctcagtctcatggaggcagctaggagccagtcattgaa 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989  cataagtatgaagctagttgtcctcagtctcatggaggcagctaggagccagtcattgaa 930

                                                                        
Query: 408  acccactgctcacagcagctgaaggctgtgcacattcaacatcataaatggaatctgcat 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  acccactgctcacagcagctgaaggctgtgcacattcaacatcataaatggaatctgcat 870

                                                                        
Query: 468  aaagcctgaacaatgtcacctgtagcattagtggtgttaccttcctgactttttcttggc 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  aaagcctgaacaatgtcacctgtagcattagtggtgttaccttcctgactttttcttggc 810

                                                                        
Query: 528  ccccaccaaccctttgtggccttcatcatggctcacagaggccttatttcattaactgag 587
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 809  ccccaccaaccctttgtggccttcatcatggctctcagaggccttatttcattaactgag 750

                                                                        
Query: 588  aggtgtgcttcagtaggaggcaggggaaaaagggcataagtagagattcaagaatgtgga 647
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 749  aggtgtgcttcagtaggaggcaggggaaaaagggcataagtagagattcaaggatgtgga 690

                 
Query: 648  gaaga 652
            |||||
Sbjct: 689  gaaga 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)