BAC Information

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BAC

Clone NameMSMg01-312C02
Chromosome1 (Build37)
Map Location 55,334,549 - 55,335,127
singlet/doubletsinglet
Overlap genenone
Upstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2
Downstream geneLOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312C02.T7 (MSMg01no312_c02.b1)MSMg01-312C02.TJ (MSMg01no312_c02.g1)
ACCAG434434AG434435
length734729
length of high quality
(start - end)
680 (49 - 728)270 (436 - 705)
definitionCHROMAT_FILE: MSMg01no312_c02.b1 PHD_FILE: MSMg01no312_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:08 2005CHROMAT_FILE: MSMg01no312_c02.g1 PHD_FILE: MSMg01no312_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTCATATCTTTCCTATTTCAGTATCTTTGGATCTGGTAATT
AAAGAGTTTCAACTTTTTGGAATCATGTTGTATTTTTCATTATTCTTATG
CTTCTGTGTTGAGGTTTGTGCAGCTAATAATAGATACACATCTTCTGATT
TTATTTGGGAGTCGTTTTAGTAAGCAGTCCTTACTTGGAAGTTCAACCCC
AATACCACCAAGAAAGGGGAAAATAAACTAACACACTAGGAAACACCATG
TCTCCAAATAACTAAATACTTGAGAATGGTTAAAGCCAGCAGGGCAGGTG
ACAGAATACTAGAAGCCTCTCCCCTGCGCCTGGGTGGTAAAGGTCAGTGG
AAACGGTTCACAGTGAGCCTTGCAAGGGTGCTATTGTCAGCTTTGGCCCA
AAATTTGCTTCTTTGTGCTATAAGCAGAACTTAATGCAGAGACTCATAAG
TGATCAGAATGCTCAGCCCTAAATGGGACATCTATATCAATGTGCCAGTG
CTCAGGAGCCTCACAGAAGAGGACAGAAAGAGTATGGATGAAGAGGGTTG
CTGTGAAATGCCATCTTCTGGACATGAAGTGGTCATTGCACTCATGAGCT
CGCTGCACTTAGGCCTACCTGCGTAAGCTCAAGCCAAAATGGTCAGTCAG
TAGTCTAACTGGCAGTGCTAATTAATTAGACTCN
ACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATCTA
TACAGAGAAACCCTGTCTCATAAAACCAAAAACAAAAAACAAACAAACAA
AAAACAAAACAAAACAAAACCCCCCCAAAAAAACAAAAAACAAGAGTTGG
CTTGGTCATGGTGTCTCTTCATCACAATGAAACCTAAACTAAGATTGTGT
GTGAGGGTAATTAATTATATGATTTAGGCTGTAGAACTGTTTCTTTTACA
AATTTGGGTGCCTTTATGTTTGGGGGCATAGGTATTAAGAATAGAAATGT
CTTCTTGCTTTTTTTTCTTTTTGACCACACCTACTATCCTTCCTTATTTC
TTCTGATTAGTTTTGGTTTGAAGACAAAAAACAAAAATATTAAAATGGCT
ACAACAGCTTGCTTCTTAGGTCCATTTGCTTGGAAAAATCTTTTTCCAAC
TCCTATGAGATAATGTCTATCACTGATATTATAAGGTTTGTTTCTTGGAT
GCAACAGAGGGATTGATCCTGTTTTCACACCCATTCTGTTCGTCTGTGTC
TTTTTATTGGGAATTGACCAATGAGTGTTGATTCCTGCTATTTCATTGTT
GTAGTAGTTGGTGTTAGTGGTAATGGTGGTGATGCTGTGTGTGTGTGTGT
GTTTCTCTCCTTCGACTTTTCTCTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_c02.b1 MSMg01no312_c02.b1 CHROMAT_FILE:
MSMg01no312_c02.b1 PHD_FILE: MSMg01no312_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:08 2005
         (680 letters)



>mm_chr1_55334549_55335628
          Length = 1080

 Score = 1073 bits (555), Expect = 0.0
 Identities = 572/579 (98%), Gaps = 3/579 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtcatatctttcctatttcagtatctttggatctggtaattaaagagtttcaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaattctgtcatatttttcctatttcagtatctttggatctggtaattaaagagtttcaa 520

                                                                       
Query: 65  ctttttggaatcatgttgtatttttcattattcttatgcttctgtgttgaggtttgtgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctttttggaatcatgttgtatttttcattattcttatgcttctgtgttgaggtttgtgca 460

                                                                       
Query: 125 gctaataatagatacacatcttctgattttatttgggagtcgttttagtaagcagtcctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gctaataatagatacacatcttctgattttatttgggagtcgttttagtaagcagtcctt 400

                                                                       
Query: 185 acttggaagttcaaccccaataccaccaagaaaggggaaaataaactaacacactaggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acttggaagttcaaccccaataccaccaagaaaggggaaaataaactaacacactaggaa 340

                                                                       
Query: 245 acaccatgtctccaaataactaaatacttgagaatggttaaagccagcagggcaggtgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acaccatgtctccaaataactaaatacttgagaatggttaaagccagcagggcaggtgac 280

                                                                       
Query: 305 agaatactagaagcctctcccctgcgcctgggtggtaaaggtcagtggaaacggttcaca 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 279 agaatactagaagcctctcccctgcacctgggtggtaaaggtcagtggaaacggttcaca 220

                                                                       
Query: 365 gtgagccttgcaagggtgctattgtcagctttggcccaaaatttgcttctttgtgctata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gtgagccttgcaagggtgctattgtcagctttggcccaaaatttgcttctttgtgctata 160

                                                                       
Query: 425 agcagaacttaatgcagagactcataagtgatcagaatgctcagccctaaatgggacatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 agcagaacttaatgcagagactcataagtgatcagaatgctcagccctaaatgggacatc 100

                                                                       
Query: 485 tatatcaatgtgccagtgctcaggagcctcacagaagagga---cagaaagagtatggat 541
           ||||||||||||||||| |||||||||||||||||||||||   |||||||| |||||||
Sbjct: 99  tatatcaatgtgccagtactcaggagcctcacagaagaggaggacagaaagaatatggat 40

                                                  
Query: 542 gaagagggttgctgtgaaatgccatcttctggacatgaa 580
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  gaagagggttgctgtgaaatgccatcttctggacatgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)