BAC Information

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BAC

Clone NameMSMg01-312F04
Chromosome1 (Build37)
Map Location 60,060,241 - 60,060,555
singlet/doubletsinglet
Overlap geneIca1l
Upstream gene4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496
Downstream geneWdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312F04.T7 (MSMg01no312_f04.b1)MSMg01-312F04.TJ (MSMg01no312_f04.g1)
ACCAG434576AG434577
length737738
length of high quality
(start - end)
319 (41 - 359)292 (70 - 361)
definitionCHROMAT_FILE: MSMg01no312_f04.b1 PHD_FILE: MSMg01no312_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:22 2005CHROMAT_FILE: MSMg01no312_f04.g1 PHD_FILE: MSMg01no312_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGACAGCCAGGACTATACAGAGAAACCCTGTCTCAAAAAACCAATAAT
AATAATAATAATAAAAGAAACTTGGTTAGGCCTCAATCCTATTAAGGAGG
AACATGCCTGAGTTGTACAAAGTGGAATTAAAAAGTGACATTTTAAATGC
AATTTAAGTCAGTCTTTTACATTTAAATCATCTGAATGACTGTGATAAAA
CATTTTGACATTAAAAATGTGGCCATTTCAATTTAATACATATACCATCT
TACCTGGTTCTCTTTCAAATCTCTCTTCCTCTTCCTCTTCAGACAAAGCT
ACCCTAAAGTATTTTCTTTACCCCCCCCCCCCCCTGGATTAAGCACATTC
AAGGTTCGTAGCCCCCCCCCTCATATAAAAAAAAAAAAAATTCTGGAGGG
ACGTATAATACTTATCTGGTCGATCAAATCTGTACCAGTGTTATCTCTAG
AACTGCACAGACTATAAAAATCCTTGCTTTTTGCTGTTGGCCCCGTTTTG
CTTCGTAGACAAGGTTTCTCTGTGCTGGCTGCTTCGATCTGACCCTTATG
AGTTGATTGTCTGCCCCTGCCCCTGTTCCTCCGTTTAGGACCCCTATGTT
TTGCCCCTTTTGTCCTGTTTTTTACCCCCTTGTCTCTCCCTTATCTACTC
TGCCGTCTCCGCCTTTTATCCCTTTATTTTCCCGCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAA
TTCAGGTGACAGCAGATGTTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGTTCTCATTTCCCCACCCCGCCCCCCCGGGTAAGAAGGACA
CATGCTCCACTATGCCCCCACCAGCAATAAAAATAATAGCCAGAAGCTGG
AAAGAATCCAGATGCCCCTCAACAGATGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGGAACTCACACAATATGTACTCCCTGATAAGTGGATA
TTAGTCCATAACCTACGATACCCATGATATCAGAAATTTTTTTCCTATAG
TCCTGTATACTCTCCAATAATGAACTACTGATGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_f04.b1 MSMg01no312_f04.b1 CHROMAT_FILE:
MSMg01no312_f04.b1 PHD_FILE: MSMg01no312_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:22 2005
         (319 letters)



>mm_chr1_60060037_60060755
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 311/315 (98%), Gaps = 3/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttccaggacagccaggactatacagagaaaccctgtctcaaaaaaccaataataataata 67
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttccaggacaggcaggactatacagagaaaccctgtctcaaaaaaccaataataataata 264

                                                                       
Query: 68  ataat---aaaagaaacttggttaggcctcaatcctattaaggaggaacatgcctgagtt 124
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataataacaaaagaaacttggttaggcctcaatcctattaaggaggaacatgcctgagtt 324

                                                                       
Query: 125 gtacaaagtggaattaaaaagtgacattttaaatgcaatttaagtcagtcttttacattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtacaaagtggaattaaaaagtgacattttaaatgcaatttaagtcagtcttttacattt 384

                                                                       
Query: 185 aaatcatctgaatgactgtgataaaacattttgacattaaaaatgtggccatttcaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatcatctgaatgactgtgataaaacattttgacattaaaaatgtggccatttcaattt 444

                                                                       
Query: 245 aatacatataccatcttacctggttctctttcaaatctctcttcctcttcctcttcagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatacatataccatcttacctggttctctttcaaatctctcttcctcttcctcttcagac 504

                          
Query: 305 aaagctaccctaaag 319
           |||||||||||||||
Sbjct: 505 aaagctaccctaaag 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)