BAC Information

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BAC

Clone NameMSMg01-312I22
Chromosome1 (Build37)
Map Location 19,726,069 - 19,912,531
singlet/doubletdoublet
Overlap genenone
Upstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312I22.T7 (MSMg01no312_i22.b1)MSMg01-312I22.TJ (MSMg01no312_i22.g1)
ACCAG434741AG434742
length773748
length of high quality
(start - end)
118 (80 - 197)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no312_i22.b1 PHD_FILE: MSMg01no312_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:39 2005CHROMAT_FILE: MSMg01no312_i22.g1 PHD_FILE: MSMg01no312_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,726,069 - 19,726,186)(19,912,245 - 19,912,531)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTTTAAATGTCTATTATAGAAAAATCAAAAAAAAAAAAGAAAACAAAGG
AAGAAAATAAAAAGTAAAGCACCTTGAATATGCCTTTCTACAATGATTTT
AAATTTGGCATATTCCTGTCTGATACTTTTGTATATGTATTCTTAAAAAT
AGAAAAAAACATAAAAATACAATCAACTTTTTTGTAAAATATGAATTTAT
TATAACATAGCTTCACAGACTTCGAATCTACCGAGTATTACAATTTTTTA
CACTCAACAGAAGTAGGTATTTTTTTTAATGATCTTACCCAGAGTACCGA
ATTCTGTTCTTTTCTAATCAGACCTTTCTATTTGTTTATGACAATATAAT
TATTCTTTATTGCCCCCCCACGATTTCATGTATCTCATAAATATGGTATG
CATGTTAACCCCTTAAATTATTTGAACATTTGTGAGATTAATCGTATATT
ACCAATTTGTACCCCACCTTTATTTTCTTGAACTATTTTCACATTTATTC
TTTTCCCACTTTTTATATACTATTTATAAAATTAATGCCCTATCGCCTCC
GTTTCCACTTGTAACTTTTATTTTCCTCGTCTCTTAGCTTATTTATTTCT
TTTGGTGCCCACCTTTTTATATCTTCTCATCACCATTCCTCTTTTCTCTC
CTCCTTTTATGCTTATTTTAGAGAATCTCTGATGTACCAATCCTTTTTTT
TCACCCTTTTTTTCCCCCTTTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGATCTGCCATTATCCAATTGCCTAGTGGC
AGTCAGGGTTACATCTTCAACGGAGAATAATGAGAACAGGAAGTAGAAAC
TAGGGAAGCACCTAAGGACATGGAAACCCAAAGCAGTGGTTTCAGAAACG
TTGTTGGTTTTTAGGCTAGGACTATGAGAAAGGAGATCTGATCTCTTATC
TTCTCAATAAGCAGCCCTGCCAGGAGGCTACATGCCAGGGAGAGAGAAGA
GAATGTCTACGCAGAGGCTGATCCTTCCTGGTGATCAGTATTGGAATGGG
ATCTCTGTGNNTTCANTTACCCAAAACGTCCCTATTTATTCCCTAATCTC
AGCTCGTCTATTACCTGTTTATATTAAAAAATAAAAATTCAGAGGGGGGG
TGATCAACCCATTAAAGAAAACTTCTGATCAAGATAATAGAATTTTTGGC
CTGACTGGAGACTTAATATTTAGCTGCTCACATCAACCACCTGATCAAGG
AAGGTTCTCCAGACACCATGATCATGAAACGGGTGGTATACTTATCCCTT
TGATGAGATGGGTGGAATAATTCTCCCTTTGATGGCCTGGGTGGTATAAA
CATCCCTTTGATGGTATGTGTAGAATAATCATCCCTTTGATGTGAAGCCT
TGTATGTTTATCTTCCATGATATTGTCCCTCGCCCTTGAAAGTACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_i22.b1 MSMg01no312_i22.b1 CHROMAT_FILE:
MSMg01no312_i22.b1 PHD_FILE: MSMg01no312_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:39 2005
         (118 letters)



>mm_chr1_19725869_19726386
          Length = 518

 Score =  228 bits (118), Expect = 7e-65
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaaaaaagaaaacaaaggaagaaaataaaaagtaaagcaccttgaatatgcctttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaaaaagaaaacaaaggaagaaaataaaaagtaaagcaccttgaatatgcctttct 260

                                                                     
Query: 61  acaatgattttaaatttggcatattcctgtctgatacttttgtatatgtattcttaaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatgattttaaatttggcatattcctgtctgatacttttgtatatgtattcttaaa 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no312_i22.g1 MSMg01no312_i22.g1 CHROMAT_FILE:
MSMg01no312_i22.g1 PHD_FILE: MSMg01no312_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:40 2005
         (287 letters)



>mm_chr1_19912045_19912731
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatctgccattatccaattgcctagtggcagtcagggttacatcttcaacggagaataa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 487 agatctgccattatccaattgcctaatggcagtcagggttacatcttcaacggagaataa 428

                                                                       
Query: 61  tgagaacaggaagtagaaactagggaagcacctaaggacatggaaacccaaagcagtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgagaacaggaagtagaaactagggaagcacctaaggacatggaaacccaaagcagtggt 368

                                                                       
Query: 121 ttcagaaacgttgttggtttttaggctaggactatgagaaaggagatctgatctcttatc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttcagaaactttgttggtttttaggctaggactatgagaaaggagatctgatctcttatc 308

                                                                       
Query: 181 ttctcaataagcagccctgccaggaggctacatgccagggagagagaagagaatgtctac 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttctcaatgagcagccctgccaggaggctacatgccagggagagagaagagaatgtctac 248

                                                          
Query: 241 gcagaggctgatccttcctggtgatcagtattggaatgggatctctg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcagaggctgatccttcctggtgatcagtattggaatgggatctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)