BAC Information

Click to search

BAC

Clone NameMSMg01-312N19
Chromosome1 (Build37)
Map Location 141,556,515 - 141,556,806
singlet/doubletsinglet
Overlap geneEG624286
Upstream geneLOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1
Downstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312N19.T7 (MSMg01no312_n19.b1)MSMg01-312N19.TJ (MSMg01no312_n19.g1)
ACCAG434959AG434960
length728730
length of high quality
(start - end)
228 (126 - 353)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no312_n19.b1 PHD_FILE: MSMg01no312_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:02 2005CHROMAT_FILE: MSMg01no312_n19.g1 PHD_FILE: MSMg01no312_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:02 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATTTTTTTCTGAGATGTAACTATAAGTTCAGTGTTGTTATAAGTAAT
TTCAAAAATTAATTCTTCTCCGAATTTAACAACAGTAGTGAGAACTTTAA
TCATAATACTAGTTAACTGGTAAAAGAATCTGAAAAGACAAAAATGGAGA
AATCTCGTATATTAATAGGTTGTAAGAATAAATATTGAAGTGTCCACATC
TCCTGTGAAAACTATCAGACTTTATGAACCCACCCTGAAATACCAATAAC
ATTTTTCATTCTTATAGGAGTAAAAATCTCAAATTTGTATGGAGGTACCA
TAGAATGATTTTATAACTGGAACTACAGCAGAAAGGAAAATCTGGAGACA
TCGTAATACCTGATTTCAACATACATCATGAGCCCCACAGTAACCAGAAC
TCTATGATCACACCAACGAATGAGAAGAGTGATTTGAATACTGATCTATG
TATCTGCAGTTAACTGATCTTAAAAGACTTTCCAAAATCTTATGTTATAG
AACTGATATCATATTCAATGAATGATATAACGATAATTAATATCCATATG
GAGGTGATTAAAATTTGATACTCTGTCTTTCTGGGCAAATTCAACTGAAA
GTTGGTCAAAGACACTGATGCAATAACAAACCACTGAAAATACAGGAAAA
CACAACAGGTAAATATTTCATTGGTTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCAGTCCCCATATTACATTTATTTTAAG
ATCCACCCTTTCTCATTTTGAATCATTTCAGAGATTTAAGCTCATTTTTT
ATGCTATAAATTTTAATTCACTTTGAATTGTTGTCACAGGCAAGCATTCA
TTCAATGAGAGAAAAGTCCACCTGTGAAATGACAAAAAAAATTGGCTTTC
ATTTATTTTATACTTTTATAATTTTGATATTTTCACATAATTATATTGCT
CTTCTTATTCCTTCACAACTGTCCCATAGTCCCCTCCTTCTTCTCTGATT
CAGGTTTTCTTTTGTCCCCCCCCCCCCCGCACACATATTTCTATATCTAT
ATACATATATATCTATACCTAAATAACAAACTTCTTCATCCATTCAATAT
GATTTGTAAATACTGTATGACTGATACTCTGTACAGTGTGGAGAATAGTA
GTCACACTTTTCCTTTTGAATGAGTGAGTATACAAACTATACAGTAAGAA
AAGCAAAAGAACACGTAATGAGAAAGAGATTAGATAAATAGGTAACACAG
ACAGACTGAACAATGATAGACAGACAAACAGAGAACATTATTTCAGGAAC
TACGAAGTCCAACACTGATCTTCTAAGGTAGCTAACTTGTGGCATAACTT
ATTGCAGCTATCTGGGCTTCCCCTCTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_n19.g1 MSMg01no312_n19.g1 CHROMAT_FILE:
MSMg01no312_n19.g1 PHD_FILE: MSMg01no312_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:02 2005
         (291 letters)



>mm_chr1_141556315_141557006
          Length = 692

 Score =  509 bits (263), Expect = e-148
 Identities = 285/293 (97%), Gaps = 3/293 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagtccccatattacatttattttaagatccaccctttctcattttgaatcatttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 492 ctcagtccccatattacatttattttaagatccaccctttctcattttgtatcatttcag 433

                                                                       
Query: 61  agatttaagctcattttttatgctataaattttaattcactttgaattgttgtcacaggc 120
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 432 agatttaagctca-tttttatgctataaatttgaattcactttgaattgttgtcacaggc 374

                                                                       
Query: 121 aagcattcattcaatgagagaaaagtccacctgtgaaatgac--aaaaaaaattggcttt 178
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 373 aagcattcattcaatgagagaaaagtccacctgtgaaatgacaaaaaaaaaattggcttt 314

                                                                       
Query: 179 catttattttatacttttataattttgatattttcacataattatattgctcttcttatt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 313 catttattttatacttttataattttgatattttcacataattatattgctcttcttttt 254

                                                                
Query: 239 ccttcacaactgtcccatagtcccctccttcttctctgattcaggttttcttt 291
            |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcttcacaactgttccatagtcccctccttcttctctgattcaggttttcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space:   192606
Effective search space used:   192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)