Query= MSMg01no312_n20.b1 MSMg01no312_n20.b1 CHROMAT_FILE:
MSMg01no312_n20.b1 PHD_FILE: MSMg01no312_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:02 2005
(317 letters)
>mm_chr1_51604311_51605027
Length = 717
Score = 580 bits (300), Expect = e-170
Identities = 312/316 (98%), Gaps = 2/316 (0%)
Strand = Plus / Minus
Query: 4 ggaattctatgcagttgttttcatacctggttatcattgcagtaaataatccagtaatct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggaattctatgcagttgttttcatacctggttatcattgcagtaaataatccagtaatct 439
Query: 64 ttgcttttataaattttattttaaataattccaagttactgaaaaattccaatgctagaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgcttttataaattttattttaaataattccaagttactgaaaaattccaatgctagaa 379
Query: 124 cctagaattcttatatcccatgtggtgattcttgccacatcgtgagttctttatacagag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cctagaattcttatatcccatgtggtgattcttgccacatcgtgagttctttatacagag 319
Query: 184 acaaatgcctttttaattgaattacttaaagatttatttattttatttatatgagtgcac 243
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 318 acaaatgcctttttaattgaattacttaaagatttatttattttatttatttgagtgcac 259
Query: 244 tgtagtagctgtcctcaaacaca-aa-aagagggcatcagatcccattatggatggttgt 301
|||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 258 tgtagttgctgtcctcaaacacacaagaagagggcatcagatcccattatggatggttgt 199
Query: 302 gagccaccatgtggtt 317
||||||||||||||||
Sbjct: 198 gagccaccatgtggtt 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no312_n20.g1 MSMg01no312_n20.g1 CHROMAT_FILE:
MSMg01no312_n20.g1 PHD_FILE: MSMg01no312_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:03 2005
(235 letters)
>mm_chr1_51430457_51431091
Length = 635
Score = 385 bits (199), Expect = e-111
Identities = 226/235 (96%)
Strand = Plus / Plus
Query: 1 gtgaacgttcaaccaaattgctattgacaacgaaatattcaaagcatttctgttcctctt 60
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 201 gtgaacgttcaaccaaattgctattgacaaccaaatactcaaagcatttctgttcctctt 260
Query: 61 gcatgttctgagcttcactgagacattgttccacttacagcacttgtggtagcccttcca 120
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gcatggtctgagcttcactgagacattgttccacttacagcactcatggtagcccttcca 320
Query: 121 caaatacttgctagatttactaccataactgttttctcaagagaatggagcaccctctaa 180
|||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 caaatatttgttagatttactaccataactgttttctcaagagaatagagcaccctctaa 380
Query: 181 ggtaagatagctgtaggggaattttaatcaagcaacatggctgctctggcaagga 235
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtaagatggctgtaggggaattttaatcaagcaacatggctgctctggcaagga 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
