Query= MSMg01no312_o23.b1 MSMg01no312_o23.b1 CHROMAT_FILE:
MSMg01no312_o23.b1 PHD_FILE: MSMg01no312_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:08 2005
(681 letters)
>mm_chr1_19725829_19726909
Length = 1081
Score = 1201 bits (621), Expect = 0.0
Identities = 663/677 (97%), Gaps = 2/677 (0%)
Strand = Plus / Plus
Query: 5 gaattcactttaaattcacattttagaaaaatcaaaaaaaaaaaagaaaacaaaggaaga 64
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 207 gaattcactttaaatgcatattttagaaaaatc-aaaaaaaaaaagaaaacaaaggaaga 265
Query: 65 aaataaaaagtaaagcaccttgaatatgcctttctacaatgattttaaatttggcatatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaataaaaagtaaagcaccttgaatatgcctttctacaatgattttaaatttggcatatt 325
Query: 125 cctgtctgatacttttgtatatgtattcttaaaaatagaaaaaaatataaaaatacaatc 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 326 cctgtctgatacttttgtatatgtattcttaaaaatag-aaaaaatataaaaataaaatc 384
Query: 185 aacttttttgtaaaatatgaatttattaaaatatagtttcatagccttcgaatctacaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacttttttgtaaaatatgaatttattaaaatatagtttcatagccttcgaatctacaga 444
Query: 245 gcagtacaattttttacactcaacagaagtaggtatttggcataatgatcttaggcagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagtacaattttttacactcaacagaagtaggtatttggcataatgatcttaggcagag 504
Query: 305 tacagaattctgctcatttcaaacaagacctttctatttgtttttgagaataaacttaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacagaattctgctcatttcaaacaagacctttctatttgtttttgagaataaacttaac 564
Query: 365 cttcaatgtctaaccaatatttcaggtatcttagaaatatggtaggcaagtgaaataaaa 424
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 565 cttcaatgtctaaagaatatttcaggtatcttagaaatatggtaggcaaatgaaataaca 624
Query: 425 tacattataggaagaagtgtgagattaatcgcataaacacaatttgtaaaagatagttat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacattataggaagaagtgtgagattaatcgcataaacacaatttgtaaaagatagttat 684
Query: 485 ttatttgaactaaaaacacacacatctctgtgatatatcatgatacgtataaatcaaatg 544
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 685 ttatttgaactaaaaacacacacatctctgtgatatatcatgatacatataaatcaaatg 744
Query: 545 ccaaatgcttcaaagacaagccagatagccatgagcatgtgcttggcatggtgtgcatca 604
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 745 ccaaatgcttcaaggacaagccagatagccatgagcttgtgcttggcatggtgtgcatca 804
Query: 605 aggtaggaataggatggaggagacatgagcagggcaaatggggagcaacttcagaagaat 664
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggtaggaacagggtggaggagacatgagcagggcaaatggggagcaacttcagaagaat 864
Query: 665 gttgtcatcctcaggag 681
|||||||||||||||||
Sbjct: 865 gttgtcatcctcaggag 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no312_o23.g1 MSMg01no312_o23.g1 CHROMAT_FILE:
MSMg01no312_o23.g1 PHD_FILE: MSMg01no312_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:08 2005
(616 letters)
>mm_chr1_19911717_19912731
Length = 1015
Score = 1137 bits (588), Expect = 0.0
Identities = 609/616 (98%), Gaps = 1/616 (0%)
Strand = Plus / Minus
Query: 1 agatctgccattatccaattgcctagtggcagtcagggttacatcttcaacggagaataa 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 815 agatctgccattatccaattgcctaatggcagtcagggttacatcttcaacggagaataa 756
Query: 61 tgagaacaggaagtagaaactagggaagcacctaaggacatggaaacccaaagcagtggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgagaacaggaagtagaaactagggaagcacctaaggacatggaaacccaaagcagtggt 696
Query: 121 ttcagaaacgttgttggtttttaggctaggactatgagaaaggagatctgatctcttatc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttcagaaactttgttggtttttaggctaggactatgagaaaggagatctgatctcttatc 636
Query: 181 ttctcaataagcagccctgccaggaggctacatgccagggagagagaagagaatgtctac 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttctcaatgagcagccctgccaggaggctacatgccagggagagagaagagaatgtctac 576
Query: 241 gcagaggctgatccttcctggtgatcagtattggaatgggatctctgtgttttcatggaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 575 gcagaggctgatccttcctggtgatcagtattggaatgggatctctgtgttttcatgg-a 517
Query: 301 aaaaaatggttcatatttattccctaatctcagctcgtctattaaacgctttttttacca 360
|||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct: 516 aaaaaatggttcatatttattccctaatctcagctcatctattaaatgttttttttacca 457
Query: 361 ttacctattcagagcagaaatgatcaacccattaaagaaaacttctgatcaagataatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttacctattcagagcagaaatgatcaacccattaaagaaaacttctgatcaagataatag 397
Query: 421 aatttttggcctgactggagacttaatatttagctgctcacatcaaccacctgatcaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aatttttggcctgactggagacttaatatttagctgctcacatcaaccacctgatcaagg 337
Query: 481 aaggttcaccagaaaccatgatcatgaaacgggtggaatacttatccctttgatgagatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaggttcaccagaaaccatgatcatgaaacgggtggaatacttatccctttgatgagatg 277
Query: 541 ggtggaataattctccctttgatggcctgggtgggataatcatttctttgatgggatggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggtggaataattctccctttgatggcctgggtgggataatcatttctttgatgggatggg 217
Query: 601 tagaataatcatccct 616
||||||||||||||||
Sbjct: 216 tagaataatcatccct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space: 609030
Effective search space used: 609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
