BAC Information

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BAC

Clone NameMSMg01-313A13
Chromosome1 (Build37)
Map Location 50,679,303 - 50,679,708
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313A13.T7 (MSMg01no313_a13.b1)MSMg01-313A13.TJ (MSMg01no313_a13.g1)
ACCAG435084AG435085
length1,2611,222
length of high quality
(start - end)
412 (43 - 454)378 (73 - 450)
definitionCHROMAT_FILE: MSMg01no313_a13.b1 PHD_FILE: MSMg01no313_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:16 2005CHROMAT_FILE: MSMg01no313_a13.g1 PHD_FILE: MSMg01no313_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTGCACTGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTTGAAGTTTGAAATCTTATTAAAATAAAGGACGTCTGATGACCTTA
GTATCAATGTACTGAACTGAATCACACAGCAGATGTGCAGACTCTCTTGG
AGGAAAGAGCAATTCAAAAAAATAAAGCAAAACACAACAGAATTACAAAG
CATTGAATTTAATACACTTGCTTGTTTCCATTGGGGATATCTCAATTGTC
ACATCAATTTTAAATATTAATATGTAGTACAGTTTTCCTTGTACAAACAC
TGAGTTAGCCAATGTTAGGGTTTGGCCCCATGAAATAATGTAGAAGCCCA
CCTCCAAAATCCAACGTTAATAGTAGTAAAATGGTAAGCATTTTGTATGG
CTATGACATCTAAGGTATTGTCTTTGAAAATTGATTAGCACTAGATAAGG
CCTTTTTTTTCACCCCCCTGGNGTCTTCCTATGCTAAGGAAAAAAAAAGG
GGGGTACACCTCAGTATATTCATTTCTTCTGTTATGTGACACAATGCTAC
CTGTCATATTGAGGCTGTCAGCAGGAAGACTCACAGAATACTAATACAAT
TGTAGTAGGATAATGTGTGTATATATATATATATATATATATATATACAT
TAATACATTATTTTATATAATATATTGTATATCATTAGAAATATAGAAAT
AAAGAAACTAGAAGCTATTACAAAAGAATGTGAAATCTATCAATTGGGAA
AGAAATGTGCAGTTAATTACTTAAAAACCTGTGTCTGTTACTATATGATA
TATTGTTTCTTCAAATTAAGAAATACTCATTTTTCTTGCATCTCCCAAAT
CATTTAAGATCAAGGATCAGGGTCATATGCTCAGCTGAATCAGCCTAAAC
GTTTCAAAATACTTGGCCCTTAACTTTTAAAGCCAGTAACCCAATTGCCC
AATACCTGATTAGCGTGGCAGTCCAAATCTCATATTATTTTCTTGACATA
TTAAAACCTAACAAACTATGTGGTTTCTCTCTACAGACCGATTCAACCCC
TGTAAAGCTCTAATATTTTCGCTGTATGTCTTTTCAGGCTTTACTTTACA
GTTCTTTACTACCCACTGTCTTTTTCTCGCACTCTACGTATCTCCATTTT
TTTATCAAACTCACATTCTTTACCTACCTCTTCCACTAAATCAATACTCA
TCTAACTCTCATATTTTTATCCCTTTATCATCAATCCCTCCTCCTACTTA
CATTCTATCTT
NNNTTGATGTGAGTAGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGACTTTTATCATGAGT
GGGTGTTGGATTTTCTCAAATGCTCCCTCCACATCTAACCAGATGATTAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATACTGGATTACATTGATGGATT
TCCGTATATTGAACCATTCCTGCATCCCTGGAATAAAACCTACTTGGTCA
GGATGGATGATTGTTTTGATGTGTTCTTGGATTCAGTTAGTGAGAATTTT
GTTGAGTATTTTTGCATTGATATTCATAAGGTAAATTGGTCTGAAGTTCT
CTATCTTTGTTGGATCCTTCTGTGGTTTAGGTATCAGAGTAATTGTGTTT
TCATAGAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGGAATTT
TTTTTCCCCCCCCCCCACTTAAATCTTCTTTGAAGAAAAAAGAGAGGGGG
GCGCTANNCCCNTTTGGTCCTGGGCTTTTTTTTTTGGTTGGGAGACCATT
AATGACTGCTTCTATTCCTTTAGGGGATATGGGAATGTTTAGATCATTAA
CTTGATCCTGGTTTAACTTTGGTACCTGGTATCTGTCTAGAAATTTGTCC
ATTTCATTGAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTATATAAGGA
TCTGATGCTGTTTTGTATTTCTTCAGGCTTTGTTGTATGTTTCCCTTTTC
TTAACGATTTTTTTTTTTATCGTCTGCTCCCTGTTCTCTTCTATATACTC
CTGTTAACGTATTTTCTATCTTGCTCATTATACTCCTTTATCTATTTTTT
TTTTTACTGTTCTTACCATTATTATTTTTTTATTTTTTTTATTTTACCTT
TTTACTATCATATTTTATATTTTCCTCTATTTTTTACTTTATTTTTTATT
TATTTTTCTTTTATTCTTTTTCTTTTTTTTTTTATCCCTCTCTCTAATTT
TTTTCCTATCCCTTTCTAATTTAATCCTTACTACATTTCTCCTTCATTAT
CTTCTCTTTATTCTTTCTCCTCCATTCATTCTTCTCCCTATACTCATACA
TTTTCTTTTTTTCTTTTCCCTAATTATACTCTCTCATCATTTTTTCATAC
TATTTACTTATTTTCTTCTTCTCATTATTCTTTTTTTAATCTATATTTTC
CATTCTATTTTTTTTATATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_a13.b1 MSMg01no313_a13.b1 CHROMAT_FILE:
MSMg01no313_a13.b1 PHD_FILE: MSMg01no313_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:16 2005
         (412 letters)



>mm_chr1_50679099_50679910
          Length = 812

 Score =  754 bits (390), Expect = 0.0
 Identities = 402/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttgaagtttgaaatcttattaaaataaaggacgtctgatgaccttagtatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaattcctttgaagtttgaaatcttattaaaataaaggacgtctgatgaccttagtatca 551

                                                                       
Query: 65  atgtactgaactgaatcacacagcagatgtgcagactctcttggaggaaagagcaattca 124
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atgtactgaactgaatcagagagcagatgtgcagactctcttggaggaaagagcaattca 491

                                                                       
Query: 125 aaaaaataaagcaaaacacaacagaattacaaagcattgaatttaatacacttgcttgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaaaaataaagcaaaacacaacagaattacaaagcattgaatttaatacacttgcttgtt 431

                                                                       
Query: 185 tccattggggatatctcaattgtcacatcaattttaaatattaatatgtagtacagtttt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 430 tccattggggatatctcaattgtcacatcaattttaaatattaatatgtagtgcagtttt 371

                                                                       
Query: 245 ccttgtacaaacactgagttagccaatgttagggtttggccccatgaaataatgtagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccttgtacaaacactgagttagccaatgttagggtttggccccatgaaataatgtagaag 311

                                                                       
Query: 305 cccacctccaaaatccaacgttaatagtagtaaaatggtaagcattttgtatggctatga 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 310 cccacctccaaaatccaacgttgatagtagtaaaatggtaagcattttgtatggctatga 251

                                                         
Query: 365 catctaaggtattgtctttgaaaattgattagcactagataaggcc 410
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 catctaaggtattgtctttgaaaattgattagcactagataaggcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)