Query= MSMg01no313_d01.b1 MSMg01no313_d01.b1 CHROMAT_FILE:
MSMg01no313_d01.b1 PHD_FILE: MSMg01no313_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:36 2005
(847 letters)
>mm_chr1_19896187_19897433
Length = 1247
Score = 1044 bits (540), Expect = 0.0
Identities = 564/572 (98%), Gaps = 1/572 (0%)
Strand = Plus / Minus
Query: 1 ctggtgactcactaactacataagagtaaacatctcagcgacaataaccacacactcttt 60
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 593 ctggtgactcactaaccacataagagcaaacatctcagcgacaataaccacacactcatt 534
Query: 61 ttatgaggacattggaagcattttattagttaggcatctggctctaaagagagattgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttatgaggacattggaagcattttattagttaggcatctggctctaaagagagattgctt 474
Query: 121 ccacatgagaatggtagtttatatattcagtatctgttcactctcatgttttgccgatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ccacatgagaatggtagtttatatattcagtatctgttcactctcatgttttgccgatca 414
Query: 181 ctgtgccaaaaccaagcatatagtggccacagtgacaaaaagtccaggctttcatagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctgtgccaaaaccaagcatatagtggccacagtgacaaaaagtccaggctttcatagaac 354
Query: 241 actttcattttggcattcatgtcttagttaattaattttgtggcaccaggaatcatacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 actttcattttggcattcatgtcttagttaattaattttgtggcaccaggaatcatacgt 294
Query: 301 agcctggtgcatgttaagcaagtccttactttggaaacctcaagtccaagagattctttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agcctggtgcatgttaagcaagtccttactttggaaacctcaagtccaagagattctttt 234
Query: 361 ctaacaaagacgatctggaaagctgcactgctttcgtttcctggttcaattcccaacact 420
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 233 ctaacaaagaggatctggaaagctgcactgcttacttttcctggttcaattcccaacact 174
Query: 421 cacatggcagattacaaccatcaagaactcttcactccacaagatctgaggccctcttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 cacatggcagattacaaccatcaagaactcttcactccacaagatctgaggccctcttct 114
Query: 481 agctgttatgggcaccaggagcacacaggatacaaaggcctaagttcagtcaaaatgtcc 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 113 agctgttatgggcaccaggaacacacaggatacaaaggcctaagttcagtcaaaatgtcc 54
Query: 541 atgcatgttaaataaaatttaaa-aaaaaaaa 571
||||||||||||||||||||||| ||||||||
Sbjct: 53 atgcatgttaaataaaatttaaacaaaaaaaa 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 847
Length of database: 1247
Length adjustment: 10
Effective length of query: 837
Effective length of database: 1237
Effective search space: 1035369
Effective search space used: 1035369
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_d01.g1 MSMg01no313_d01.g1 CHROMAT_FILE:
MSMg01no313_d01.g1 PHD_FILE: MSMg01no313_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:36 2005
(379 letters)
>mm_chr1_19867455_19868233
Length = 779
Score = 725 bits (375), Expect = 0.0
Identities = 378/379 (99%)
Strand = Plus / Plus
Query: 1 tcagagatctaaggaaataacacctgctgtgtttttcgtttttggtgtctctaaaacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagagatctaaggaaataacacctgctgtgtttttcgtttttggtgtctctaaaacaca 260
Query: 61 tatgaaaggtttttggattttatggatagaaatactcaaaaaattatgtccccaattcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgaaaggtttttggattttatggatagaaatactcaaaaaattatgtccccaattcca 320
Query: 121 ctctctaaactgtgacacaccagtacaatgttttattggtcattgtcatgttctatcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctctaaactgtgacacaccagtacaatgttttattggtcattgtcatgttctatcaag 380
Query: 181 tctcatgactgacataattgcaacgatagtaaatgtaatggacattgggatgttcatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcatgactgacataattgcaacgatagtaaatgtaatggacattgggatgttcatgag 440
Query: 241 tatctgctgaaataaggtaactaatgagcctattaagtagtctgctagcacggatgtagc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tatctgctgaaataaggtaactaatgagcctattaagtagtctgctagcacggaggtagc 500
Query: 301 attgagctctggagagtgacgagtgaaatgtttgggatgtaggtagaatgcaatgttagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgagctctggagagtgacgagtgaaatgtttgggatgtaggtagaatgcaatgttagc 560
Query: 361 acccatgaccagcagacta 379
|||||||||||||||||||
Sbjct: 561 acccatgaccagcagacta 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
