BAC Information

Click to search

BAC

Clone NameMSMg01-315H19
Chromosome1 (Build37)
Map Location 195,091,715 - 195,122,875
singlet/doubletdoublet
Overlap geneG0s2
Upstream geneKcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1
Downstream geneLamb3, Camk1g, LOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315H19.T7 (MSMg01no315_h19.b1)MSMg01-315H19.TJ (MSMg01no315_h19.g1)
ACCAG436117AG436118
length756750
length of high quality
(start - end)		327 (33 - 359)344 (76 - 419)
definitionCHROMAT_FILE: MSMg01no315_h19.b1 PHD_FILE: MSMg01no315_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:58 2005CHROMAT_FILE: MSMg01no315_h19.g1 PHD_FILE: MSMg01no315_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(195,091,715 - 195,092,034)(195,122,532 - 195,122,875)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACCTTCC
TGTCCGTCTAAAGCACTCTGAAAACTCCTAAACAGGTATTGGATACTTTC
CATCTGAGTATCTTCTATTAAATTCTCTTATTAATGTTTGAGCCAATTAA
GAGAACATGGGTTGTGTGAGGCAGACAAGCCCTCCTTTAATTTAGTTGTT
GGTTCTACTCCAGTATAGTTTTGGAAAGTTTCATAAGGCCTATTTTTATT
TTTATGTAACTGTTCCTAATTTCTTTAGGGCTGCTTTCTGGTTTACTAAT
CATGGTTGCTCATTTCTGTTGAACTCTCTGAAGAAATGGGTGACTTGCAT
GGAAGGTCAGGTACCCCCACCTGCCAGACAGAAACACAAAAGGAGGGTGG
GCTTCCCCCCCCCTTTCTCACCTCAGATGTGTATTGCCTGGGGCTGTTTG
TATTTTCATGTTACTTCTGCTACTCAGGTACTTCATGTGAACCTTCTCCC
CATTTAAATTGCCCAACACAACACTATAACCTGCTACTATCCACTGCNCA
CGCCTAAGGCTCTCCGCTCTTCTTTCCCCCAGCCACTCTCTCCAATCCTC
TCCTTCGTCTCCTTCCCTCCTCTCTTTCCCTCTTCAATAACCCCCCGCTC
CTACCCCTCTTTTTTTTCCACTCCCCCCATCCTCCCCTACCTCTTTCCAC
TTCCTTTCCTCCATCTCCCCCTTCCTCCCTCTTTTTCTATCCTCTGCCTC
TCCTCT

NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCCCCAATGCCCTCATTTGATAGC
TGACCCATCACCTTGCCCCTGATTCACCCTTCTATCCACTCAGCCGTTGA
CTTCTGGGAATTAGGTTCTTGGGAACTAAGTCGATCCCTGTGAACTATAG
ACTCGCTGCACAGACCTAGCTGTGTCTAGCCATGGCCCAGACCCACCAAG
GTGAGAACTGGACACTCTTTGGAAAGGACAGCAGGCAGCCCCGTTGGCAG
CTCTGCGTAGCTGAGGAAGGAACAACGAGGTATTGCATGAATAGAACATT
AGCAGCTGGAGATCTTCTCCCCACACTACATAAGACTGCCCACAGGAATG
TACGTCTTCATATGATCTGTGTCCCCCCCCAAGAGACAAGCTTAAGCGTC
TAGTGTTTAATCTAGCATTTTTGAAGGCTGACTGTGGAAGAGTAAGCACC
CTGTGTCTAAGGAGGAAGGAGCAGGCCATGCCTGGGCTGTTTGTAAGCAA
CACCATGCATCACATAAATGAGCACCTCCTGCAGCGCCCGTGCCTGTAAC
CGGCCCTATGCATAGACCTGACCTGGCTCCACCCTGTTACTCTACCCCGG
CAACGGTCCTTATTCGCTTTTTTTATCTTCTCCCACTCTTATTTATCTCG
TATCCTTCTTTCATCCTTTCTTCTTTCCCTTCAATGGTCCCGTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_h19.b1 MSMg01no315_h19.b1 CHROMAT_FILE:
MSMg01no315_h19.b1 PHD_FILE: MSMg01no315_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:58 2005
         (327 letters)



>mm_chr1_195091508_195092234
          Length = 727

 Score =  588 bits (304), Expect = e-172
 Identities = 316/320 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttctaccttcctgtccgtctaaagcactctgaaaactcctaaacaggtattggatacttt 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctaccttcctgtctgtctaaagcactctgaaaactcctaaacaggtattggatacttt 267

                                                                       
Query: 68  ccatctgagtatcttctattaaattctcttattaatgtttgagccaattaagagaacatg 127
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccatctgagtatcttttattaaattctcttattaatgtttgagccaattaagagaacatg 327

                                                                       
Query: 128 ggttgtgtgaggcagacaagccctcctttaatttagttgttggttctactccagtatagt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggttgtgtgaggcagacaagccctcctttaatttagttgttggttctactccagtatagt 387

                                                                       
Query: 188 tttggaaagtttcataaggcctatttttatttttatgtaactgttcctaatttctttagg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttggaaagtttcataaggcctatttttatttttatgtaactgttcctaatttctttagg 447

                                                                       
Query: 248 gctgctttctggtttactaatcatggttgctcatttctgttgaactctctgaagaaatgg 307
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 448 gctgctttctggtttactaatcatggttgctcatttctggggaactctctgaagaaatgg 507

                               
Query: 308 gtgacttgcatggaaggtca 327
           ||||||||||||||||||||
Sbjct: 508 gtgacttgcatggaaggtca 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no315_h19.g1 MSMg01no315_h19.g1 CHROMAT_FILE:
MSMg01no315_h19.g1 PHD_FILE: MSMg01no315_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:58 2005
         (344 letters)



>mm_chr1_195122332_195123075
          Length = 744

 Score =  627 bits (324), Expect = 0.0
 Identities = 339/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccccaatgccctcatttgatagctgacccatcaccttgcccctgattcacccttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atccccaatgccctcatttgatagctgacccatcaccttgcccctgattcacccttctat 485

                                                                       
Query: 61  ccactcagccgttgacttctgggaattaggttcttgggaactaagtcgatccctgtgaac 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ccactcagccgttgacctctgggaattaggttcttgggaactaagtcgatccctgtgaac 425

                                                                       
Query: 121 tatagactcgctgcacagacctagctgtgtctagccatggcccagacccaccaaggtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tatagactcgctgcacagacctagctgtgtctagccatggcccagacccaccaaggtgag 365

                                                                       
Query: 181 aactggacactctttggaaaggacagcaggcagccccgttggcagctctgcgtagctgag 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aactggacactcttcggaaaggacagcaggcagccccgttggcagctctgcgtagctgag 305

                                                                       
Query: 241 gaaggaacaacgaggtattgcatgaatagaacattagcagctggagatcttctccccaca 300
           ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 304 gaaggaacagcgaggtattgcatgaatagaacattagcagctggagatcttccccccaca 245

                                                       
Query: 301 ctacataagactgcccacaggaatgtacgtcttcatatgatctg 344
           |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 244 ctacataagactgcccacaggactgtacgtcttcatatgatctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |