Query= MSMg01no315_i06.b1 MSMg01no315_i06.b1 CHROMAT_FILE:
MSMg01no315_i06.b1 PHD_FILE: MSMg01no315_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:00 2005
(345 letters)
>mm_chr1_181445175_181445920
Length = 746
Score = 638 bits (330), Expect = 0.0
Identities = 342/346 (98%), Gaps = 1/346 (0%)
Strand = Plus / Minus
Query: 1 gcaagcccttcacagaacacactcgtttctatggttgtagggctctgagctccctagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 546 gcaagcccttcacagaacacactcgtttctatggttgtagggctctgagctgcctagttg 487
Query: 61 agaatcattgcagcctgaaaactgtattagggaaatgctggtacatccttaatgtggttt 120
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 486 agaatcattgcagcctgaaaactgtattagtgaaatgctggtacattcttaatgtggttt 427
Query: 121 cccatcagtaatgatgtgcatcattgtggaatacattttcctgttcttcttcttgtacgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cccatcagtaatgatgtgcatcattgtggaatacattttcctgttcttcttcttgtacgt 367
Query: 181 ggagtttgtttgtttgtttattattcaccatcacttataaagtgagaagaaggtgttgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggagtttgtttgtttgtttattattcaccatcacttataaagtgagaagaaggtgttgta 307
Query: 241 ttgttgagtttttgtgttctaatgcagagcagacatagctctcattttgtaatatgagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttgttgagtttttgtgttctaatgcagagcagacatagctctcattttgtaatatgagtg 247
Query: 301 tctggcaggattattttgcaaactttttt-ctttttctttttcttt 345
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 246 tctggcaggattattttgcaaactttttttctttttctttttcttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 746
Length adjustment: 9
Effective length of query: 336
Effective length of database: 737
Effective search space: 247632
Effective search space used: 247632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_i06.g1 MSMg01no315_i06.g1 CHROMAT_FILE:
MSMg01no315_i06.g1 PHD_FILE: MSMg01no315_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:00 2005
(589 letters)
>mm_chr1_181269105_181270093
Length = 989
Score = 1131 bits (585), Expect = 0.0
Identities = 588/589 (99%)
Strand = Plus / Plus
Query: 1 tcagcagtaaaataaaggctggtagcccctgcgttttcattagttttccagtaacactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcagtaaaataaaggctggtagcccctgcgttttcattagttttccagtaacactgg 260
Query: 61 atgcagtgtgaattataatgaagcagaaagcagcagcaggccctttaaaggacatatagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcagtgtgaattataatgaagcagaaagcagcagcaggccctttaaaggacatatagg 320
Query: 121 gaacagagagaagcactcccattcacatggccacagacactggccagtccaggccaccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagagagaagcactcccattcacatggccacagacactggccagtccaggccaccac 380
Query: 181 cgtgtcctatgaactttagtaaccatgaggtatgtcatgtaggaaaatatttcattaacc 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtgccctatgaactttagtaaccatgaggtatgtcatgtaggaaaatatttcattaacc 440
Query: 241 tgcatgataagaagtgcttgattgctaacgcagtaagccatgcatgccataaaaacacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatgataagaagtgcttgattgctaacgcagtaagccatgcatgccataaaaacacag 500
Query: 301 aacagaatatagaatgatataaatctgctaaaatgtctgtaataagccttcatgactacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagaatatagaatgatataaatctgctaaaatgtctgtaataagccttcatgactacg 560
Query: 361 tgatttgaaactagaaaatgtttcctatgttttgtttcaatggaagtaaaacctttaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatttgaaactagaaaatgtttcctatgttttgtttcaatggaagtaaaacctttaggg 620
Query: 421 aaaacctagggtgtcaatccagtttaacaggagagagcaatgtggacagaaagacagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaacctagggtgtcaatccagtttaacaggagagagcaatgtggacagaaagacagaaa 680
Query: 481 atgatgataggacattgagacacatctcacaacacagccagtcatctcggcattcgattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgatgataggacattgagacacatctcacaacacagccagtcatctcggcattcgattt 740
Query: 541 ctaacttcttactgtcaaaacagtaggtcttctggacagcttaggttgg 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaacttcttactgtcaaaacagtaggtcttctggacagcttaggttgg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
