Query= MSMg01no315_k12.b1 MSMg01no315_k12.b1 CHROMAT_FILE:
MSMg01no315_k12.b1 PHD_FILE: MSMg01no315_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:12 2005
(369 letters)
>mm_chr1_160607566_160608334
Length = 769
Score = 644 bits (333), Expect = 0.0
Identities = 357/365 (97%)
Strand = Plus / Minus
Query: 5 gaattcaatactagcctctgatacacatctgttcagtgactagtgccaggagccaaaaca 64
|||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 569 gaattcaatactagactctgatacacatctgttcagtgactagtaccaagagccaaaaca 510
Query: 65 cattcatgggagattcaagtaacagaataaatacggttgtgtagcattaataaaaggaag 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 509 cattcatgggagattcaagtaacggaataaatacggttgtgtagcattaataaaaggaag 450
Query: 125 gcagatgctgagggagtgaaggatgagaaccagccttcctttgttgagactctatggggg 184
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 449 ggaggtgctgagggagtgaaggatgagaaccagccttcctttgttgagattctatggggg 390
Query: 185 acctttcaggatgtcacaactcaaccttcacactagacaacaaggtttatcttattacaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acctttcaggatgtcacaactcaaccttcacactagacaacaaggtttatcttattacaa 330
Query: 245 acacttgcttgctgcagctccagaaggatggtttcaggataagggcagtagaaacatact 304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acacttgcttgctgcggctccagaaggatggtttcaggataagggcagtagaaacatact 270
Query: 305 tatgcagtggtctgagtgttatgacatattaaaattcttagaaagtatcctgctagtttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tatgcagtggtctgagtgttatgacatattaaaattcttagaaagtatcctgctagtttt 210
Query: 365 gaata 369
|||||
Sbjct: 209 gaata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_k12.g1 MSMg01no315_k12.g1 CHROMAT_FILE:
MSMg01no315_k12.g1 PHD_FILE: MSMg01no315_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:12 2005
(178 letters)
>mm_chr1_160433248_160433827
Length = 580
Score = 329 bits (170), Expect = 7e-95
Identities = 177/180 (98%), Gaps = 2/180 (1%)
Strand = Plus / Plus
Query: 1 cttggccctaacgtaacagaacaagatcagggtcaaaaacatgaagcaaaggaagatctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggccctaacgtaacagaacaagatcagggtcaaaaacatgaagcaaaggaagatctg 260
Query: 61 ttcttttaagatagcccacctctctctctctc--aaactgctatgaataagtacacctta 118
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ttcttttaagatagccaacctctctctctctctcaaactgctatgaataagtacacctta 320
Query: 119 aaagacagcatctcaagagtggtcctcaaggtactgcccagtcccttctttgaggaagac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagacagcatctcaagagtggtcctcaaggtactgcccagtcccttctttgaggaagac 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 580
Length adjustment: 8
Effective length of query: 170
Effective length of database: 572
Effective search space: 97240
Effective search space used: 97240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
