Query= MSMg01no316_a08.b1 MSMg01no316_a08.b1 CHROMAT_FILE:
MSMg01no316_a08.b1 PHD_FILE: MSMg01no316_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:40 2005
(679 letters)
>mm_chr1_48755939_48757021
Length = 1083
Score = 932 bits (482), Expect = 0.0
Identities = 604/680 (88%), Gaps = 60/680 (8%)
Strand = Plus / Plus
Query: 5 gaattcattcctatgtcc-agccttttgggtaaagaatttagcattacaatacatagcaa 63
|||||||||||| || || ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 259 gaattcattcctgtg-cctagccttttgggtaaagaatttagcattacaatacatagcga 317
Query: 64 aagatgaaatgtcaatataatttctgtgactgctctttattattttactcttactttaaa 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagatgaaatgtcaatataattgctgtgactgctctttattattttactcttactttaaa 377
Query: 124 gaatctgataccctctagtgaactctgtgcatacagctactgacacaattctatgcactc 183
|||||||| |||||||||| ||
Sbjct: 378 gaatctgacaccctctagt-----------------------------tt---------- 398
Query: 184 atacagagatggaacatatatatatatataataaaccaattaaataatgtccagattgaa 243
| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 399 ---------t------tatatatatataaaataaaccaattaaataatgtccagattgaa 443
Query: 244 tgtcattcacaagagtacaatagaagttactttaattttattttaaaaggaaaaaaatcg 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 444 tgtcattcacaagagtacaatagaagttactttaattttatttttaaaggaaaaaaatcg 503
Query: 304 ttttaaagctattttccagcagatgtttctgattcaacaatgattttttttttttacttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttaaagctattttccagcagatgtttctgattcaacaatgattttttttttttacttt 563
Query: 364 gagatgataggcacgttttaatacggttcttagttaaaagattaaagaatattttaatga 423
||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagatgataggtatgttttaatatggttcttagttaaaagattaaagaatattttaatga 623
Query: 424 cacttattcttagttaaaagcttaaagaatattttatta--cttattccttattttctgt 481
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 624 cacttattcttagttaaaagcttaaagaatattttattatacttattccttattttctgt 683
Query: 482 --tataatatgtctttctaggttttcttatatgtgaaaattttattcatttttgtccagt 539
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 684 gttacaatatgtctttctaggttttcttatatatgaaaattttattcatttttgtccagt 743
Query: 540 ctattagaactatgcccatcacttcaaaactttaatggaactatacaaatcttaacacat 599
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctataagaactatgcccatcacttcaaaactttaatggaactatacaaatcttaacacat 803
Query: 600 tgaatgacctcaattaagcagtcagaaattattaccatgattgtcattataacttttatt 659
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 804 agaatgacctcaattaagcagtcagaaatcattaccatgattgtcgttataacttttatt 863
Query: 660 agaattgttaaatattatta 679
| ||||||||||||||||||
Sbjct: 864 ataattgttaaatattatta 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1083
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1073
Effective search space: 717837
Effective search space used: 717837
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_a08.g1 MSMg01no316_a08.g1 CHROMAT_FILE:
MSMg01no316_a08.g1 PHD_FILE: MSMg01no316_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:40 2005
(543 letters)
>mm_chr1_48934339_48935281
Length = 943
Score = 582 bits (301), Expect = e-170
Identities = 316/321 (98%)
Strand = Plus / Minus
Query: 1 tacttaggaactagaaattaaattaaccaatcatagggaatgctgaaattccccaggttt 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tacttaggaactagaaattaaattaacctatcatagggaatgctgaaattccccaggttt 262
Query: 61 ggcttttgaaatttatagaggattattacttttagttataaaatctgtggttttgatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttttgaaatttatagaggattattacttttagttataaaatctgtggttttgatttt 202
Query: 121 aaaaataaattctttaaaatcagggacaagacaaggttgccaactctctccctacctagt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aaaaataaattctttaaaatcagggacaagacaaggttgccaactctctccctaccgagt 142
Query: 181 aaatatagtatttgaagttcaagctagagcaattagacaataaaaaatcaaatggataca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 aaatatagtatttgaagttcaagctagagcaattagacaataaaaaatcaaatggataca 82
Query: 241 aattgttaatgaggaaattaagatatcactatttgcagatgatatgatagtatacataag 300
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aattgggaaggaggaaattaagatatcactatttgcagatgatatgatagtatacataag 22
Query: 301 tgataacaaaatttataccag 321
|||||||||||||||||||||
Sbjct: 21 tgataacaaaatttataccag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
