CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGTGTATCTTATTGGTTCTTGGATGGTGATAGCTTCCATTCACT
GTAACAACACGCCCAAGACAGTTCATTTACAGAGGAAAAGCTTCTCTTGG
TTCACAGTTCTAGTAACTCTGGCTGAGGATTGTATTGACATGTGCTTTGG
GCCTTGGGGCCAGCAAGTACTAGATGGAAAAATCGGGATGTGTGTGGTAG
TAACAAAGAGTCATCTCATATCAAAAATATGAAAAAGATGGAAGGACATG
CTGAGTATTGACAACACACTTCAAGAGTCTGCCCATGAGGCTCCACCTCT
TAAAGATTTCATCATTTTCTAATAGGGATCTTGTCTTTAAGTGGCTAATC
AACAACATTCAACCCACACCATTCAACACCTGGCTTTCAGCGACACCTGT
TTGTTTCACAATGAAAAGTGCACTCATGCAGTCCTCGAGAATACCTGAAG
TTTTAGGTGTCCCAGCACCGCTCAAAACTCCTCTGGTGGTTTTCTGTAAG
CTAGATGCAAAATGGGTTCCCAGCCCTGACGGAAAACTGAAAGAAAGTTC
CTCATTTCTGGATGTATGAAAGGACTGTGTAGTGTTAAGACAGGCACATG
CTAAGCATCTCTAGTCCAAAAGGGAGAAATAGAAAAACATGGAGGGTAAG
GTCAAAGTAAGGCTGAAAGCCAGAAAGTGA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCCACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TAAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCATAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACCACGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGGTACAATTTG
CTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGN

Query= MSMg01no316_e17.b1 MSMg01no316_e17.b1 CHROMAT_FILE:
MSMg01no316_e17.b1 PHD_FILE: MSMg01no316_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:00 2005
         (678 letters)



>mm_chr1_77054699_77055776
          Length = 1078

 Score = 1218 bits (630), Expect = 0.0
 Identities = 663/674 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagtgtatcttattggttcttggatggtgatagcttccattcactgtaacaac 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gaattccaagtggattttattggttcttggatggtgatagcttccattcactgtaacaac 727

                                                                       
Query: 65  acgcccaagacagttcatttacagaggaaaagcttctcttggttcacagttctagtaact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acgcccaagacagttcatttacagaggaaaagcttctcttggttcacagttctagtaact 667

                                                                       
Query: 125 ctggctgaggattgtattgacatgtgctttgggccttggggccagcaagtactagatgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctggctgaggattgtattgacatgtgctttgggccttggggccagcaagtactagatgga 607

                                                                       
Query: 185 aaaatcgggatgtgtgtggtagtaacaaagagtcatctcatatcaaaaatatgaaaaaga 244
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 606 aaattcgggatgtgtgtggtagtaacaaagagtcatctcatatcaaaaatataaaaaaga 547

                                                                       
Query: 245 tggaaggacatgctgagtattgacaacacacttcaagagtctgcccatgaggctccacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tggaaggacatgctgagtattgacaacacacttcaagagtctgcccatgaggctccacct 487

                                                                       
Query: 305 cttaaagatttcatcattttctaatagggatcttgtctttaagtggctaatcaacaacat 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 486 cttaaagatttcatcattttctaatagggatctcgtctttaagtggctaatcaacaacat 427

                                                                       
Query: 365 tcaacccacaccattcaacacctggctttcagcgacacctgtttgtttcacaatgaaaag 424
           |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 426 tcaacctagaccattcaacacctggctttcagcgacacctgtttatttcacaatgaaaag 367

                                                                       
Query: 425 tgcactcatgcagtcctcgagaatacctgaagttttaggtgtcccagcaccgctcaaaac 484
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 366 tgcactcatgcagtcctcgagaatacctgaagttctaggtgtcccagcaccgctcaaaac 307

                                                                       
Query: 485 tcctctggtggttttctgtaagctagatgcaaaatgggttcccagccctgacggaaaact 544
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 306 tcctctggtggttttctgtaagctagatgcaaaatgggttcccagccctgtcggaaaact 247

                                                                       
Query: 545 gaaagaaagttcctcatttctggatgtatgaaaggactgtgtagtgttaagacaggcaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gaaagaaagttcctcatttctggatgtatgaaaggactgtgtagtgttaagacaggcaca 187

                                                                       
Query: 605 tgctaagcatctctagtccaaaagggagaaatagaaaaacatggagggtaaggtcaaagt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgctaagcatctctagtccaaaagggagaaatagaaaaacatggagggtaaggtcaaagt 127

                         
Query: 665 aaggctgaaagcca 678
            |||||||||||||
Sbjct: 126 gaggctgaaagcca 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)