BAC Information

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BAC

Clone NameMSMg01-316I04
Chromosome1 (Build37)
Map Location 17,970,711 - 17,971,053
singlet/doubletsinglet
Overlap genenone
Upstream geneJph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564
Downstream geneLOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316I04.T7 (MSMg01no316_i04.b1)MSMg01-316I04.TJ (MSMg01no316_i04.g1)
ACCAG436836AG436837
length734744
length of high quality
(start - end)		695 (40 - 734)345 (75 - 419)
definitionCHROMAT_FILE: MSMg01no316_i04.b1 PHD_FILE: MSMg01no316_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:16 2005CHROMAT_FILE: MSMg01no316_i04.g1 PHD_FILE: MSMg01no316_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:16 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTAAGAATGTTCTCTATTCCATAACATTCAAATTCACTTTTAGTAGAGAC
AGTGAAAATAATCAGGCATTACAAAGTAAAGAGCTAGGAAAACTCAGGGC
TAGTCTGCAGAGTGATTACTTAGGACAGTAGCTAAGTAATTATAAATAAA
GCTGCTATGAACATAGTGGAGCATATGTCCTTATTACAAATTGGAGCATC
TTCTGGGTATATGCCCAGGAGAAGTATTGCTCTTCTGCATCTCCCCTCAC
ATCTGGATCTACCCCATTTCTCTCTTGCATTAGAAAATGAACAGGATTCT
AAGAGAATATATATAATATAATATAATATAATATAATATAATATAATATA
ATATAAATGCAGACAGCGATGACGTTCTGGGGTTCTAATAAACAGGGACA
GAATTCTAATTCTAGGCTTTTGCAGAGAATATTTGATTCAAAGAAAATTG
CTAAGAAAATTCTAGCAGTGGAGAAATTGTTTCATGAATTATGTGGAGTT
AGGTTTCCTTGGATTGATGAGTGCTTTCAATATACATGACACAATTTTCA
GAATATGAGGCCAGTGGTGAGAGCTACCTTCCTATGGCAGGAACTGCCCT
GGGGATAGACAGTCTTGGGATAGCAGTTTATTTTCACAGTGCTTTCTCGA
GTTTAACCTCTAGGAAAGTGTGCTGTCTTTTAAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTAAGGATGTGCTAAAATGTGCCAC
AGCTTTTACACAAAACTTTTTGAGTTTTAAAAGTGGATTTTCTGTGCTTC
CTATTAGAGCAAATTTAGTGTGCTTCTAAGAAAACAAACTTGTTTCTTAC
TCAACACAACACAATATCACCATCTTGTGGTGAAAGTGGTACAGGGCAGG
ATGAATTCGCCTTTAGGCTGTGCGCAGTGAGCTGAGAAACCACTGACTTC
TTGAGAAATCTATATCCCATGAAAATCCTGAGTTTCTGAAATATCTTCCC
CCAAGTCAATATTGCTAACAGATATTTACTTGTAGTAGTGGATGTCGTGA
GGAAAGATAAAGGGTGTTTGCCCGCCTGTTTGTTTGTTTTGGTGTCTCTT
GGTTTTCACAGATAAGAACATTCAGGTCCCAAGAAAGCTCTTCAGAATAA
GTTACTCTGTCAGAAATTTAAGGTATTTCATACAAGTGAAGAAAGTGCAG
CTGGAATTGAAATTTTAACTTCAACAAGTGCTATTTGCATGGAAGATTTT
ATTTTTAATAATCATTTTCTTTGACTGAATCTTTCCACTCTTTTACCTTG
TTTTCAAACCTGATACTGTTTCTTTCCATATCTCTTTGTATTTTTCATAT
CTTGTTTCATCTCAGTTTGAAGTTTTTCTCCAGTGCTTTTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_i04.g1 MSMg01no316_i04.g1 CHROMAT_FILE:
MSMg01no316_i04.g1 PHD_FILE: MSMg01no316_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:16 2005
         (345 letters)



>mm_chr1_17970511_17971253
          Length = 743

 Score =  617 bits (319), Expect = 0.0
 Identities = 338/345 (97%), Gaps = 2/345 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaggatgtgctaaaatgtgccacagcttttacacaaaactttttgagttttaaaagt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 543 tttaaggatgtgctaaaatgtgccacagcttttacacagaactttttgagttttaaaagt 484

                                                                       
Query: 61  ggattttctgtgcttcctattagagcaaatttagtgtgcttctaagaaaacaaacttgtt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 483 ggattttctgtgcttcctattagagcaaatttagtgtgcttctaagaagacaaacttgtt 424

                                                                       
Query: 121 tcttactcaacacaacacaatatcaccatcttgtggtgaaagtggtacagggcaggatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcttactcaacacaacacaatatcaccatcttgtggtgaaagtggtacagggcaggatga 364

                                                                       
Query: 181 attcgcctttaggctgtgcgcagtgagctgagaaaccactgacttcttgagaaatctata 240
           |||||||||||| |||  |||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 363 attcgcctttagtctg--cgcagtgagctgagaaaccactgacttcttgagacatctgta 306

                                                                       
Query: 241 tcccatgaaaatcctgagtttctgaaatatcttcccccaagtcaatattgctaacagata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcccatgaaaatcctgagtttctgaaatatcttcccccaagtcaatattgctaacagata 246

                                                        
Query: 301 tttacttgtagtagtggatgtcgtgaggaaagataaagggtgttt 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttacttgtagtagtggatgtcgtgaggaaagataaagggtgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 743
Length adjustment: 9
Effective length of query: 336
Effective length of database: 734
Effective search space:   246624
Effective search space used:   246624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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