BAC Information

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BAC

Clone NameMSMg01-316I14
Chromosome1 (Build37)
Map Location 8,603,455 - 8,603,996
singlet/doubletsinglet
Overlap geneSntg1
Upstream geneLOC665069, LOC100039408
Downstream geneLOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316I14.T7 (MSMg01no316_i14.b1)MSMg01-316I14.TJ (MSMg01no316_i14.g1)
ACCAG436856AG436857
length739741
length of high quality
(start - end)
545 (39 - 583)344 (72 - 415)
definitionCHROMAT_FILE: MSMg01no316_i14.b1 PHD_FILE: MSMg01no316_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:18 2005CHROMAT_FILE: MSMg01no316_i14.g1 PHD_FILE: MSMg01no316_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATCCGCGGAATTCACA
ATAGATTATCCGAAAATGATACTTTAAAATATTTACAATAGGATATTTTA
AAACATGTATAAAATGCATACATTAAATCAAATATGTATAACATACCATC
ACTACACAAAATCAAAACACTGACCCTCCTATAAGCTACAATCTGTCTGC
CTCACAGGAGGTCTCTGGTAAACAGGGAAACGTAAGAATTTCACCCAAAT
GCACAGACCAGCTAGGGCACACACAGAGCACAGCTGACATAGGACCTACC
CACCCTCCTGAGCTCCATCTTGCTTCTAGTCTGCTTTTCCATGCAGGCCA
GATCAGCAGCCAGATTCCCTCCCATTCCCTACCACCTGTGTACCTCCCGG
GAGGTATGCCCCCCCCACCATACAGGAGGCCTGCTCTAACCAGATACAGC
ACTGCCTGCCTCCCTGGAGATTGGCTCCANACCAGGTCACAGAGCTCTAT
ATAACTCCTAGGAGGCTAGCTCCAGTAAGAGACTCCAGGACCAGTTAACA
CCAGAGATAACCATATAGCAAAAGACAAAAACAAGGTCATAAGGGATAGG
AACCAGTGCAATTTGGTACCATCAGAACACAGTTCCCCCACCACAACAAG
CCCCAGATAGTGTAACATGCCTGAAAAGTGAGATAATGACCTGAAATTAC
TTCTCATGAAAACGATAGAGGTTTTTAAGGAAGATATAA
CATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAAT
GGGGTTATTTGAATTTCTACAGTCCAGCTTCTTGCGCTCTTTGAACATAT
TGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATCCTTTACCAA
TCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTGTTTTGCCTTACAGAA
GCTTTGCAATTTTATGAGGTCCCCTTTGTCAATTCTTGGTCTTACAGCAC
AAGCCATTGCTCTTCTGTTTTGGAATTTTTCCCCTGTGCCCATATCTTCG
AGGCTTTTCCCCACTTTCTTCTCTATTAATTTCAGTGTCTCTGCTTTTAT
GTGGAGGTCTTCGCCCCACCTACACTTGAGCTTTGTACAAGGAGGTAAAA
ATGGATCAATTTGCATTCTTCTATATGCTAACTTGCAGTTGAGTCAGCTC
CATTTGCTAAAAAAATGCTTTCTTTTTTTCCACTGGATGGCTTTAGCTCC
CTTGTCAAAGATCAAGTGACCACAGGTGTGTGGATTCATTTCCGCGTCTT
CAATTCTATTCCATTGATCTACCTGTCTGTCACTGTAGCAGTACCTTTAA
AAGAAGAAGGTTCAGGGAACATGCACTTTTTTCGAGAAATTGAAAATTCC
TGTCATGCTTTTGACACCTTATCACACTTATTAATTACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_i14.b1 MSMg01no316_i14.b1 CHROMAT_FILE:
MSMg01no316_i14.b1 PHD_FILE: MSMg01no316_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:18 2005
         (545 letters)



>mm_chr1_8603252_8604196
          Length = 945

 Score =  928 bits (480), Expect = 0.0
 Identities = 527/550 (95%), Gaps = 16/550 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcacaatagattatccgaaaatgatactttaaaatatttacaataggatattttaa 63
           ||||||||||||||| ||  |||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 gaattcacaatagataattagaaaatgatactttaaaatatttacaataggatactttaa 263

                                                                       
Query: 64  aacatgtataaaatgcatacattaaatcaaatatgtataacataccatcactacacaaaa 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 aacatgtataaaatgcatacattaaatcaaatatgtataatataccatcactacacaaaa 323

                                                                       
Query: 124 tcaaaacactgaccctcctataagctacaatctgtctgcctcacaggaggtctctggtaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaaaacactgaccctcctataagctacaatctgtctgcctcacaggaggtctctggtaa 383

                                                                       
Query: 184 acagggaaacgtaagaatttcacccaaatgcacagaccagctagggcacacacagagcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acagggaaacgtaagaatttcacccaaatgcacagaccagctagggcacacacagagcac 443

                                                                       
Query: 244 agctgacataggacctacccaccctcctgagctccatcttgcttctagtctgcttttcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agctgacataggacctacccaccctcctgagctccatcttgcttctagtctgcttttcca 503

                                                                       
Query: 304 tgcaggccagatcagcagccagattccctcccattccctaccacctgtgtacctcccggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcaggccagatcagcagccagattccctcccattccctaccacctgtgtacctcccggg 563

                                                                       
Query: 364 aggtatgcccccccca----cca---tacaggaggcctgctctaaccagatacagcactg 416
           ||||||||       |    |||   ||||||||||||||||||||||||||||||||||
Sbjct: 564 aggtatgc-------agtaaccaggatacaggaggcctgctctaaccagatacagcactg 616

                                                                       
Query: 417 cctgcctccctggagattggctccana-ccaggtcacagagctctatataactcctagga 475
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct: 617 cctgcctccctggagattggctcca-atccaggtcacagagctctatataactccaagga 675

                                                                       
Query: 476 ggctagctccagtaagagactccaggaccagttaacaccagagataaccatatagcaaaa 535
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 676 ggctagctccagtaagagactccaggaccagttaacaccagagataaccagatagcaaaa 735

                     
Query: 536 gacaaaaaca 545
           ||||||||||
Sbjct: 736 gacaaaaaca 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)