Query= MSMg01no316_m20.b1 MSMg01no316_m20.b1 CHROMAT_FILE:
MSMg01no316_m20.b1 PHD_FILE: MSMg01no316_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:39 2005
(690 letters)
>mm_chr1_149401205_149402294
Length = 1090
Score = 1038 bits (537), Expect = 0.0
Identities = 636/685 (92%), Gaps = 27/685 (3%)
Strand = Plus / Minus
Query: 4 ggaattcactttgtttaccaggctggcttccaactcagaaatctgcctgcctctgcctcc 63
|||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 912 ggaactcactttgtagaccaggctgacttccaactcaaaaatctgcctgcctctgcctcc 853
Query: 64 tgagtgctgggattaaaggcatgtgccacca--cgcctggcgcattatgcatttttggcc 121
|||||||||||||||||||||| |||||| |||| || |||||||||| ||||||||
Sbjct: 852 cgagtgctgggattaaaggcatgcaccaccacgcgcccggtgcattatgca-ttttggcc 794
Query: 122 tgaaggcatgattccccttttggcatccatcctccgaaaacatttctcaggtccaaggat 181
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 793 tgaaggcatgattccccttttggcatccatcctcagaaaacatttctcaggtcaaaggat 734
Query: 182 cacttgtacctgcaatccaaacagattcttctgctctgggtattcaaattttgaactgct 241
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 733 cacttgtacctgcaatccaaacatatccttctgctctgggtattcaaattatgaactgct 674
Query: 242 gagacaaaatagttaaattattttaaaagaatgtctaagaagaaaacccattcttgtttc 301
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 673 gagacaaaatagttaaattattttaaaagaacgtctaagaagaaaacccattcttgtttc 614
Query: 302 tgagcatcaacatgaagagcttgaaacagcctccagtgccagtgtctgtgcagaatgtat 361
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 613 tgagcatcaacatgaagagcttgaaacagcctccagtgccagtgtctgtggagaatgcat 554
Query: 362 atcaaaagcagcacaaatgtattagaagtcatattgctaatctgattcatagagtcatca 421
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atcaaaagcagcataaatgtattagaagtcatattgctaatctgattcatagagtcatca 494
Query: 422 atatctggacaaacagtgaaattgatatgtattttcctcatcataagcaaaattttctag 481
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atatcttgacaaacagtgaaattgatatgtattttcctcatcataagcaaaattttctag 434
Query: 482 aatatttgtcaatcaaatataacttttaaaggtaatttgttaattgtctgctttaatacg 541
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 433 aatatttgtcaatcaaatataacttttaaaggtaatatgttaatcgtctgctttaatacg 374
Query: 542 ttacttgtttaaatctttaaagctttcttttttaatatttaactaatttggcttatttgt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttacttgtttaaatctttaaagctttcttttttaatatttaactaatttggcttattt-- 316
Query: 602 ttatttatttatttatttatttatttatttatttattcaaattacatcacagtatccatt 661
||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ----------------------atttatttatttattcaaattacatcacagtatccatt 278
Query: 662 ccctctcctccctccatgccaccca 686
|||||||||||||||||||||||||
Sbjct: 277 ccctctcctccctccatgccaccca 253
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_m20.g1 MSMg01no316_m20.g1 CHROMAT_FILE:
MSMg01no316_m20.g1 PHD_FILE: MSMg01no316_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:39 2005
(662 letters)
>mm_chr1_149193945_149195006
Length = 1062
Score = 1205 bits (623), Expect = 0.0
Identities = 653/663 (98%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 1 acaaaatttagtcacttatccctctctatgtaaatgataataatttgttcataaaattta 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 200 acaaaatttagtcacttatccctctctatgtaaatgataataatttgttaataaaattta 259
Query: 61 aaacaaattagaaagtaacctttctgttagattgagaacttataatgaatttcaaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaacaaattagaaagtaacctttctgttagattgagaacttataatgaatttcaaaaaat 319
Query: 121 tgatattaaattatgtgccagtcaaataagtatattttacagaaagaaataagaaata-c 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgatattaaattatgtgccagtcaaataagtatattttacagaaagaaataagaaatagt 379
Query: 180 tttttcaggatgtgagtagattattaataatagcattgaaaatttaaaggagaaattaaa 239
|||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 tttttcagtatgtgaggagattattaataatagcatggaaaatttaaaggagaaattaaa 439
Query: 240 acagttttgtatttctttttatatcagaattaaatattgaaagcttgctcaaactctctg 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acaattttgtatttctttttatatcagaattaaatattgaaagcttgctcaaactctctg 499
Query: 300 tactaacagtgtatatcaaaataatcagtgagatatggttaatattctgtgggactatca 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 500 tactaacagtgtatatcaaaataatcagtgagatatggttaatattttgtgggactatca 559
Query: 360 gaggtaagcacactttgaataaagatttccacttgaggagtggatcttttctccagagat 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaagtaagcacactttgaataaagatttccacttgaggagtggatcttttctccagagat 619
Query: 420 agagtattttgtactattgcattcattgatgggaagttatcatacatggacatggtattt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agagtattttgtactattgcattcattgatgggaagttatcatacatggacatggtattt 679
Query: 480 atataataaattatttactaaacattatttgaaatgaacagcattacaatctttctaatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atataataaattatttactaaacattatttgaaatgaacagcattacaatctttctaatt 739
Query: 540 agctcaagaacatatttacatatccacattatagaacataaaataacatgagaggagaca 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agttcaagaacatatttacatatccacattatagaacataaaataacatgagaggagaca 799
Query: 600 gagaaagaattaaccctgcacttgaatgaaaaaacaaactatttttgtcgtgagattata 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gagaaagaattaaccctgcacttgaatgaaaaaacaaactatttttgtcgtgagattata 859
Query: 660 cct 662
|||
Sbjct: 860 cct 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
