TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATT
CACTAGAGCTGACGGAGACAGAAGCAAGAAAGTCAGACATAATGGAATAA
TTATGCACACCAAGGTCAACTCGCAAAGCAGTCACACACAAATGAAATCT
ATACAGCCATTGTCCAGGGCTAAGGTTAGAAAAAAATAGGAACAAAACTG
CTTTTTACAAAGAGCTGCTGCAGGCTACTGAGATGTCTCCATCCTGACCT
ACTGCAGGCAGTCCCTTATTTCAGATCCAGGTCCCCTGGAGGAATGGGTC
TTCTGCTTCTCAGGGTCCCAGACACCATCCTTTTCTACAAGGAGCTGCCG
CAGGCTTCTGAGATGTCTGCATCCTGGCCTACTGCAGGCAGTCCCTGTCA
TTGTATGCTGTCCCCAACCCACACAGAATGTCAGAAATGAGAGAGAGAGA
GCACACACACACATGAAGTTGTAAGGTGAAAGTAGTGGAGGGTAGCCAGT
TTTGTTGGTGGTACATACCTATCACTCTAATATTTAACAGACACAGAAGC
ATATCTCTGTGATTTGGAAGCCATCCTGGTCTAAATAGTGAGTTCTATCC
TGATTCATATACTAAGTTCCAGACTAACCAGAGATATAAAGACAGACACT
GTCTTCAATCTATAAAGATTTCATAACAAAGTTTGATCTGTCATAGAAGT
GAGGTAGAAGAAGATCTGAATCAATTTTTGCCCTGAGGTGGCN

NCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTACCTTAAATGACAGTTGTACCCT
TTCATGGACTGCTCGGCTGTATTGAATAAAAGGAAGTTACCTGATAAACA
GTACTTATTTCTTTAGGCTTCCTGAATGAGGATATAATGTAAAACAATGT
TTCATGCTCCAACAGCCATTCTTTCTACATCATGATGGACCACAAATTGA
AACTGTGAGCCAGAATACATCCTTAATGCCTTACACTGTTCATGCTAAGT
CACTCACACACACACACACACACACACACACACACACTCACACACACACA
CACAGACACACTCAGATACACACAGACACACCCACACAGACACTCAGATA
CACACAGACACACAAAAACACACACATAGACACACACATCTATCTATGTA
TCTATCTATCTATGTATCTATCTATCTATGTATCTATCTATCTATGTATC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTAATTACCCATTCTGTTTTATC
ATACATAGGGAAGTTAGTTTATCTACCACTAGATAAAATGCTATAGTTAT
AGGATAATATGTTCCCAACATGAGCCACTTATGAAGCCAGTTTAGGAAAT
GACTTCAGATGACTTCTATTGTGAGTAATTTTCTCTACGAATATTAAAGT
TTAGTTAACAGTAGCACAAGCTACTTTTATATAAATCATAATAATG

Query= MSMg01no316_p15.g1 MSMg01no316_p15.g1 CHROMAT_FILE:
MSMg01no316_p15.g1 PHD_FILE: MSMg01no316_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:53 2005
         (671 letters)



>mm_chr1_29088427_29089498
          Length = 1072

 Score =  476 bits (246), Expect = e-138
 Identities = 401/508 (78%), Gaps = 95/508 (18%)
 Strand = Plus / Minus

                                                                        
Query: 168  caaattgaaactgtgagccagaatacatccttaatgccttacactgttcatgctaagtca 227
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 1072 caaattgaaactatgagccagaatacatccttaatgccttacactgttcatgctaagt-- 1015

                                                                        
Query: 228  ctcacacacacacacacacacacacacacacacactcacacacacacacacagacacact 287
                              ||||||||||||||||||    || | ||||||||  |||||
Sbjct: 1014 ------------------cacacacacacacacact----cagatacacacag--acact 979

                                                                        
Query: 288  cagatacacacagacacacccacacagacactcagatacacacagacacacaaaaacaca 347
                  ||||||        |||||||||||||||||| |||||||||||||||||||||
Sbjct: 978  ------cacaca--------cacacagacactcagatatacacagacacacaaaaacaca 933

                                                                        
Query: 348  cacatagacacacacatctatctatgtatctatctatctatgtatctatctatctatgta 407
             |||||||||||||||||                                        ||
Sbjct: 932  gacatagacacacacatc----------------------------------------ta 913

                                                                        
Query: 408  tctatctatctatgtatctgtctgtctgtctgtctgtctgtctgtctaattacccattct 467
            ||||||||||||     |   |||||||||||||||||||||| ||||||||||||||||
Sbjct: 912  tctatctatcta-----c---ctgtctgtctgtctgtctgtctatctaattacccattct 861

                                                                        
Query: 468  gttttatcatacatagggaagttagtt--tatctaccactagataaa--atgctatagtt 523
            |||||||||||||||||||| ||| ||   | |||||||||||||||  ||  |||||| 
Sbjct: 860  gttttatcatacatagggaacttaattgcca-ctaccactagataaaacat--tatagtc 804

                                                                        
Query: 524  ataggataatatgttcccaacatgagccacttatgaagccagtttaggaaatgacttcag 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  ataggataatatgttcccaacatgagccacttatgaagccagtttaggaaatgacttcag 744

                                                                        
Query: 584  atgacttctattgtgagtaattttctctacgaatattaaagtttagttaacagtagcaca 643
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 743  atgacttctattgtgagtcattttctctacgaatactaaagtttagttaacagtagcaca 684

                                        
Query: 644  agctacttttatataaatcataataatg 671
            ||||||||||||||||||||||||||||
Sbjct: 683  agctacttttatataaatcataataatg 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space:   701982
Effective search space used:   701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)