BAC Information

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BAC

Clone NameMSMg01-317D14
Chromosome1 (Build37)
Map Location 172,505,313 - 172,682,321
singlet/doubletdoublet
Overlap geneLOC100040002, LOC640532, Olfml2b, Atf6
Upstream geneRgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap
Downstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317D14.T7 (MSMg01no317_d14.b1)MSMg01-317D14.TJ (MSMg01no317_d14.g1)
ACCAG437355AG437356
length743739
length of high quality
(start - end)		315 (48 - 362)285 (79 - 363)
definitionCHROMAT_FILE: MSMg01no317_d14.b1 PHD_FILE: MSMg01no317_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:12 2005CHROMAT_FILE: MSMg01no317_d14.g1 PHD_FILE: MSMg01no317_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,505,313 - 172,505,621)(172,682,037 - 172,682,321)
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAATGTGGAAGAAGGAACCTGTTAAGTAGAAAAGAATATCAA
ATTTCTAGATTCAAATTCTATCTGGAAATATCAGTGCCCCCTACCTTAAG
GCCCTTCTTAGCATACTACCCTTCCACATAATTTCCAGGCTCTATCTCTG
AAAACTGACCTCTACCTCTACCTCCACCACCACACAATGGCTATCCAGTA
GAAATGGACACCCCTGGTGCCCAGGATGGTGCTTCTGCACCAGCGTTGAA
CAAGATACCAGGTCTTCCTATATAAATGGGTGGCTCCAGGGTTGAGACAA
AAACATGCACTTTTTTTATAGAACCCAAAGCGAGCCACAACAAGAGAGAA
CAGGCAACAGGGGGAGGGAGAAAGACAAATTCCCCCACCCAGCAGACGGA
TCAGCTCCTAGACTCTGTGCTTATAAAATGGGCTTAGACTGGATCCCCAA
CATTAAGGGGAAGGGGAAAAAGGAAAGGGAAAGGGGACCTCACGCAACCC
TGCACAACAGGCACAGACCCAGAAAGGGGAGGGGTGGCTCTCCAGAGGCT
AAAGCAGGAGGATCACACATTCAAAGCCAGCCTGGGTGGCATACATGGTG
AGGCATCAATCAATCAATAACATGTTTTTAAAAGGTAATCGCTGGCAGTA
TCTAATCAAACCTGCAGAAGAGAGCTTTGACCTAGAGACTTTG

CTCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGATATAGGCCACGTATGA
AATGTTAAGAGGTCGTTGTTGTCACCGTTGGCCTGATACGCAAACCTCTG
GTTCCCAGCGGGTCATCCCAATGCAGGAGAGCTGCTTGGTGCTGTACTTG
AAGCCTTTGCTGACTGAGAATTCTCATTCATCGGGAGTAGCTATTCTAGG
TATTCCTTCCTATCACAGACAGACGCCCACACTGAGCCGGAGTTTCCTCA
TATAGGAGAAGCTGTTTCATCTAGTATGACATGAACTGGCTAAGAGGAGA
CTTGAACACTGTGNGTTTTTTCCCCCTATACTAACCATTTCACTTGCCAG
CTTTTGATGTAAACATCACGCCTCCGCATAAAAAACTAAGTCTGGTGCTC
ACTTTGGCAGCACATATACTAAAATTGGAACGATACAGAGAATATTAGCA
TGGCCCCTGCGCAAGGATGACACACAAATTCGTGAATTGTTCCATATTTT
TAAGGAGCTAAAGGGGTCGGCAACCCTATAGAAGGATCAATAATATGAAC
TAACCAGTACTCCCCCAGAACTGTGTCTCTAGCTGCATATGTAGCAGAGA
ATGACCTAGTTGGCCATCAATGAGAGGAGAGGCCCTTGGTCTTGCGAAGA
TCATATGCCCCAATACAAGAGAATGCCAGAGCCAGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_d14.b1 MSMg01no317_d14.b1 CHROMAT_FILE:
MSMg01no317_d14.b1 PHD_FILE: MSMg01no317_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:12 2005
         (315 letters)



>mm_chr1_172505109_172505823
          Length = 715

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaatgtggaagaaggaacctgttaagtagaaaagaatatcaaatttctagatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaatgtggaagaaggaacctgttaagtagaaaagaatatcaaatttctagatt 264

                                                                       
Query: 65  caaattctatctggaaatatcagtgccccctaccttaaggcccttcttagcatactaccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaattctatctggaaatatcagtgccccctaccttaaggcccttcttagcatactaccc 324

                                                                       
Query: 125 ttccacataatttccaggctctatctctgaaaactgacctctacctctacctccaccacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccacataatttccaggctctatctctgaaaactgacctctacctctacctccaccacc 384

                                                                       
Query: 185 acacaatggctatccagtagaaatggacacccctggtgcccaggatggtgcttctgcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acacaatggctatccagtagaaatggacacccctggtgcccaggatggtgcttctgcacc 444

                                                                       
Query: 245 agcgttgaacaagataccaggtcttcctatataaatgggtggctccagggttgagacaaa 304
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 445 agcgttgaacaagataccaggtcttcctagagaaatgggtggctccagggttgagacaaa 504

                    
Query: 305 aacatgcac 313
           |||||||||
Sbjct: 505 aacatgcac 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no317_d14.g1 MSMg01no317_d14.g1 CHROMAT_FILE:
MSMg01no317_d14.g1 PHD_FILE: MSMg01no317_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:12 2005
         (285 letters)



>mm_chr1_172681837_172682521
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggatataggccacgtatgaaatgttaagaggtcgttgttgtcaccgttggcctgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 485 agtggatataggccacgtatgaaatgttaagaggtcgttgttgtcagtgttggcctgata 426

                                                                       
Query: 61  cgcaaacctctggttcccagcgggtcatcccaatgcaggagagctgcttggtgctgtact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cgcaaacctctggttcccagcgggtcatcccaatgcaggagagctgcttggtgctgtact 366

                                                                       
Query: 121 tgaagcctttgctgactgagaattctcattcatcgggagtagctattctaggtattcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgaagcctttgctgactgagaattctcattcatcgggagtagctattctaggtattcctt 306

                                                                       
Query: 181 cctatcacagacagacgcccacactgagccggagtttcctcatataggagaagctgtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctatcacagacagacgcccacactgagccggagtttcctcatataggagaagctgtttc 246

                                                        
Query: 241 atctagtatgacatgaactggctaagaggagacttgaacactgtg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atctagtatgacatgaactggctaagaggagacttgaacactgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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