BAC Information

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BAC

Clone NameMSMg01-317D15
Chromosome1 (Build37)
Map Location 129,154,288 - 129,154,560
singlet/doubletsinglet
Overlap geneMgat5
Upstream geneE030049G20Rik, LOC383559
Downstream geneLOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317D15.T7 (MSMg01no317_d15.b1)MSMg01-317D15.TJ (MSMg01no317_d15.g1)
ACCAG437357AG437358
length732735
length of high quality
(start - end)
683 (50 - 732)273 (441 - 713)
definitionCHROMAT_FILE: MSMg01no317_d15.b1 PHD_FILE: MSMg01no317_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:12 2005CHROMAT_FILE: MSMg01no317_d15.g1 PHD_FILE: MSMg01no317_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAATTTAGCAATACCAAATGGCTGAGAAGCACCTGAAAAA
TGTTCAACATCCTTAATCATCAGGCCCATGCAAATCAAAACAACCCTGAG
ATTCCACCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCAAGGATGTGGAGAAAGGGGAACACTCCTCCATTGCTGG
TGGGATTGCAAGCTGTTACAACAACTCTGGAAATCAGTCTGGTGATTCCT
CAGAAAATTGGACATAGTACTACTGGAAGATCCAGCAATACCTCTCCTGG
GCATATACCCAGAATATGTTCCAACTGGCAATAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTACCACAGCCAAAACCTGGAAAGAACCCAG
ATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAA
TGGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAGGC
AAATGGGTGGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACA
AAAGAACACACATGATATGCACTCTCTGATAAGTGGATATTAGCCCAGAA
ACTCAGAATACACAAGATACAATTTGCAAAACACATGATACTCAAGAAGA
AGGAAGACCAAAGTGTGGATACTTCAATCCTN
NCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCTCTAGAACAGACGAGGA
AGAATCATCGTTTATTGAGTGGGCACCAGGAGGGCAGTGGGCTAAACAGT
GATCAGAGTAAGCCTGCAGTGCGGGGCAATGGACATGGCGGGGCTCTATC
TGGGAGAAGGACTTTTACAAGAGTTTCTCTGCTTGCAGTCTCCTGGCGTG
TAATTCATGCTATGGGAAGGAGGGCCTTCCAGATTAACCAAGCACAGTTC
AGGGAGGTTAGCAGAAGCCACTGTGCAGCTTCATTTCCAGTTGTACCATT
TCTGCCATGCAAATTTTGTTAGGCCACACCCCACCACCCCACAGGGTCAT
GCAAATGAGAGTACTCCTGGCAGACCCAAATTCCAAGGAAATGTCTGCTT
ATCCCAAAGCCACACCCAGTGTCCTCCCATGTTTCCATGACCTTCCTAGG
AAGAGGACCTTCTAGCAGCCAGAGAGATGGACTTCCCACAGTTTCCTGTA
TGCACAAGAGTATCCAAGAAAGTCACTAAACCACATCTGTGAAATAAGCA
AGCTCAGGGGCTCTCTGTAACCCATATGCTACGAGGTCACTATAAAATTC
CTGTGACTGGCTTACTTACTATACAACTAAACCAAGTCACTCTAAAGCAG
TAGTTCTCAACCTGTGGGTTCCGACCACTTTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_d15.g1 MSMg01no317_d15.g1 CHROMAT_FILE:
MSMg01no317_d15.g1 PHD_FILE: MSMg01no317_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:12 2005
         (273 letters)



>mm_chr1_129154088_129154760
          Length = 673

 Score =  497 bits (257), Expect = e-145
 Identities = 269/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtctgcttatcccaaagccacacccagtgtcctcccatgtttccatgaccttcctagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atgtctgcttatcccaaagccacacccagtgtcctcccatgtttccatgaccttcctagg 414

                                                                       
Query: 61  aagaggaccttctagcagccagagagatggacttcccacagtttcctgtatgcacaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aagaggaccttctagcagccagagagatggacttcccacagtttcctgtatgcacaagag 354

                                                                       
Query: 121 tatccaagaaagtcactaaaccacatctgtgaaataagcaagctcaggggctctctgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tatccaagaaagtcactaaaccacatctgtgaaataagcaagctcaggggctctctgtaa 294

                                                                       
Query: 181 cccatatgctacgaggtcactataaaattcctgtgactggcttacttactatacaactaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 293 cccatatgctacgaggtcactataaaattcctgtgactgacttacttactatacaactaa 234

                                            
Query: 241 accaagtcactctaaagcagtagttctcaacct 273
           ||||||| | ||||||||||| |||||||||||
Sbjct: 233 accaagttattctaaagcagtggttctcaacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)