ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCCCCTCTATCCTTTCTTTGTATTCAGGCTTCTGGGGAAACACCA
GATCCCACAGTGCTTTCCTTCCTGGCTCCCCCACCCTCCTTCCAGAAATT
CCCCAACGGCTGCCAAGCTTTCACACAAAGAGACAGTTTAGCCCTGCAGC
CAGCATCTGGGTAGGTAACCTGGGCCATAAGCCAGCCCCCTTCACCCCAG
CACATGACTCCTGGGGACACAGGAGAAGAGTAAGACCCAGGACAGGCACT
CTGGGGAGGGCCCAGTTGTCACCCGTGTCAAGGGTGCCTTTGCATTGAGG
GCCCCAGCCAGGCTGGGTTCCACCCTCAGCATGGCCTAACTGAAGCATGG
TGGAGCCTTCCTATGGCCCCAGTGCTTGTGAGGTGGAGGCAGAGGGATCA
GAAATTCAAGGCCTCGGCCAGAGAGAGGAAAGAGCAGTAAAGGCACCTGG
GGACAGAGTGTCGCATCTAAGAGACAGTTCTTTGTCTGCTTGGCAGTTGT
TGCATGATAAATCCAGATGGGAAATCTAACCCACCCCCCCTGATGCCTGG
GAGGGGGACCAGGAGAGTACACCACTTAAAGGGTCCCTGCTTCCTCCTCT
TCTTCCTCCTTCTTCTTCTCCTCCTCTCCCTCTTCCTCCTTCTTTCCCTC
TTCCTCCTCCTTTT

NACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGAAAGTTCATTCACAGTA
GCTTAATAAAGTACCTAGGAATAAACATAATTGAGGCCATTAACGACCTC
TACAATAAAAATGCTAAAATACTGAAGAAAGTAATTGAAGATACTGAAAG
ATGAACAGCCCTACCATACTTATGGGCTAATATAATAATTGTAAAATGGC
TGTGTTACTAAAAGAAAGTTACAGACTAAACATAATCTTTGTCAAAATTC
TACTGACATTCTCCAGAAATAGAACAGAAAATCCTATAACTCACATGAAA
GCAAAAAAGACCCCCAAATAAACAAGACAAACAAACAAACAAACACATCA
TAATCAGAGAGTATCACAGCATATGATCTCAAGGTAAACTGTACAACTGT
AGTGACAAACGCAGTGGGATTCTGGCATGAACAGACACAGACCAGTGGCT
AGAGTAATAGAACCAGAAGTAAATGCACACAATTACATCTACCATTTTAC
AAGTGTTGACAACATAGTTTTAACTTGGGTAGTGTTGATCTCTTGATAAT
CACGGATTATTCTTCATCCCCAGCTGATTAGAAACAGCCAATTTTTAATT
AAAAATATATCAACAGCCCCAATAGACTGTTTTCAAGGATTCCAAACCTT
TCTCTGAAACTTCN

Query= MSMg01no317_e22.b1 MSMg01no317_e22.b1 CHROMAT_FILE:
MSMg01no317_e22.b1 PHD_FILE: MSMg01no317_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:18 2005
         (668 letters)



>mm_chr1_121405010_121406073
          Length = 1064

 Score = 1176 bits (608), Expect = 0.0
 Identities = 648/666 (97%), Gaps = 11/666 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcccctctatcctttctttgtattcaggcttctggggaaacaccagatcccacagt 65
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcccctccatcctttctttgtattcaggcttctggggaaacaccagatcccacagt 265

                                                                       
Query: 66  gctttccttcctggctcccccaccctccttccagaaattccccaacggctgccaagcttt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctttccttcctggctcccccaccctccttccagaaattccccaacggctgccaagcttt 325

                                                                       
Query: 126 cacacaaagagacagtttagccctgcagccagcatctgggtaggtaacctgggccataag 185
            ||||||||||||||||||||     ||||||| ||||||||||||||||||||||||||
Sbjct: 326 gacacaaagagacagtttagc-----agccagcgtctgggtaggtaacctgggccataag 380

                                                                       
Query: 186 ccagcccccttcaccccagcacatgactcctggggacacaggagaagagtaagacccagg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagcccccttcaccccagcacatgactcctggggacacaggagaagagtaagacccagg 440

                                                                       
Query: 246 acaggcactctggggagggcccagttgtcacccgtgtcaagggtgcctttg-cattgagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 acaggcactctggggagggcccagttgtcacccgtgtcaagggtgcctttgacattgagg 500

                                                                       
Query: 305 gccccagccaggctgggttccaccctcagcatggcctaactgaagcatggtggagccttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccccagccaggctgggttccaccctcagcatggcctaactgaagcatggtggagccttc 560

                                                                       
Query: 365 ctatggccccagtgcttgtgaggtggaggcagagggatcagaaattcaaggcctcggcca 424
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatggtcccagtgcttatgaggtggaggcagagggatcagaaattcaaggcctcggcca 620

                                                                       
Query: 425 gagagaggaaagagcagtaaaggcacctggggacagag--tgtcgcatctaagagacagt 482
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 621 gagagaggaaagagcagtaaaggcacctggggacagagagtgtcgcatctaagagacagt 680

                                                                       
Query: 483 tctttgtctgcttggcagttgttgcatgataaatccagatgggaaatctaacccaccccc 542
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 681 tctttgtctgcttggcagttgttgcgtgataaatccagatgggaaatctaacccatcccc 740

                                                                       
Query: 543 cctgatgcctgggagggggaccaggagagtacaccacttaaagggtccctgcttcctcct 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctgatgcctgggagggggaccaggagagtacaccacttaaagggtccctgcttcctcct 800

                                                                       
Query: 603 cttcttcctccttcttcttctcctcctctccctcttcctccttctttccctcttcctcct 662
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttc---ctccttcttcttctcctcctctccctcttcctccttctttccctcttcctcct 857

                 
Query: 663 cctttt 668
           ||||||
Sbjct: 858 cctttt 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1064
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1054
Effective search space:   693532
Effective search space used:   693532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)